Aliases for RIC3-DT Gene

Subcategory (RNA class) for RIC3-DT Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for RIC3-DT Gene

  • RIC3 Divergent Transcript 2 3 5
  • RIC3-DT 2 5
  • NONHSAG007582.2 91
  • HSALNG0082537 164
  • Lnc-TUB-1 165

External Ids for RIC3-DT Gene

Previous GeneCards Identifiers for RIC3-DT Gene

  • GC11P008170
  • GC11P008171

Summaries for RIC3-DT Gene

GeneCards Summary for RIC3-DT Gene

RIC3-DT (RIC3 Divergent Transcript) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for RIC3-DT Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RIC3-DT Gene

Genomics for RIC3-DT Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RIC3-DT Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J008168 Promoter/Enhancer 1.4 EPDnew Ensembl ENCODE 600.7 -0.3 -286 1.6 PRDM10 REST GABPA POLR2A ZNF501 SCRT2 ZBTB20 ELK1 CTCF RUNX3 RIC3 RIC3-DT piR-39858-070 TUB
GH11J008204 Promoter/Enhancer 1.9 VISTA EPDnew ENCODE CraniofacialAtlas dbSUPER 11 +37.7 37731 4.6 LEF1 DDX20 MTA2 PHF21A PKNOX1 ZNF24 MTA1 REST CTCF DPF2 RIC3 RIC3-DT TUB CASC23 EIF3F lnc-LMO1-2 LMO1
GH11J008837 Enhancer 1.2 Ensembl ENCODE CraniofacialAtlas dbSUPER 9.5 +670.5 670532 4.8 FOXA1 RELA POLR2A DPF2 SOX6 CEBPA EED SOX13 CEBPB RELB TMEM9B-AS1 AKIP1 DENND2B ENSG00000255159 ENSG00000254665 RPL27A SCUBE2 RIC3 RIC3-DT TMEM9B
GH11J008241 Enhancer 1 Ensembl ENCODE CraniofacialAtlas dbSUPER 10 +73.8 73814 2.2 YY1 POLR2A RCOR1 SMARCA4 CHD2 GATA2 EZH2 RIC3 RIC3-DT lnc-RIC3-3 lnc-TUB-7 LMO1
GH11J008201 Enhancer 0.8 ENCODE dbSUPER 10.8 +33.6 33560 2.4 IKZF2 RELA DPF2 RELB RUNX3 USF2 IKZF1 NR2F1 BATF TAL1 RIC3 RIC3-DT lnc-LMO1-2 LMO1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RIC3-DT on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RIC3-DT Gene

Genomic Locations for RIC3-DT Gene
chr11:8,169,087-8,180,605
(GRCh38/hg38)
Size:
11,519 bases
Orientation:
Plus strand

Genomic View for RIC3-DT Gene

Genes around RIC3-DT on UCSC Golden Path with GeneCards custom track
RIC3-DT in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
RIC3-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RIC3-DT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RIC3-DT Gene

Proteins for RIC3-DT Gene

Post-translational modifications for RIC3-DT Gene

No Post-translational modifications

No data available for DME Specific Peptides for RIC3-DT Gene

Domains & Families for RIC3-DT Gene

Gene Families for RIC3-DT Gene

genes like me logo Genes that share domains with RIC3-DT: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RIC3-DT Gene

Function for RIC3-DT Gene

Phenotypes From GWAS Catalog for RIC3-DT Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RIC3-DT Gene

Localization for RIC3-DT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RIC3-DT Gene

Pathways & Interactions for RIC3-DT Gene

PathCards logo

SuperPathways for RIC3-DT Gene

No Data Available

Gene Ontology (GO) - Biological Process for RIC3-DT Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RIC3-DT Gene

Drugs & Compounds for RIC3-DT Gene

No Compound Related Data Available

Transcripts for RIC3-DT Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for RIC3-DT Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000022E0FA_9606 lncRNA 3734 5

HGNC: 54191,

Ensembl: ENST00000499752 (view in UCSC) ,

LncBook: HSALNT0171728,

LNCipedia: lnc-TUB-1:1,

NONCODE: NONHSAT017843.2,

URS00008BF648_9606 lncRNA 3712 2

LNCipedia: lnc-TUB-1:3,

NONCODE: NONHSAT017845.2,

URS00008B943C_9606 lncRNA 387 2

LNCipedia: lnc-TUB-1:2,

NONCODE: NONHSAT017844.2,

URS00009C0BE3_9606 lncRNA 4078 1

NONCODE: NONHSAT158798.1,

URS00009C07AC_9606 lncRNA 3984 1

NONCODE: NONHSAT158797.1,

RIC3-DT in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for RIC3-DT Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for RIC3-DT Gene

No ASD Table

Relevant External Links for RIC3-DT Gene

GeneLoc Exon Structure for
RIC3-DT

Expression for RIC3-DT Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RIC3-DT Gene

Orthologs for RIC3-DT Gene

Evolution for RIC3-DT Gene

ENSEMBL:
Gene Tree for RIC3-DT (if available)
TreeFam:
Gene Tree for RIC3-DT (if available)

No data available for Orthologs for RIC3-DT Gene

Paralogs for RIC3-DT Gene

No data available for Paralogs for RIC3-DT Gene

Variants for RIC3-DT Gene

Additional dbSNP identifiers (rs#s) for RIC3-DT Gene

Additional Variant Information for RIC3-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RIC3-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RIC3-DT Gene

Disorders for RIC3-DT Gene

Additional Disease Information for RIC3-DT

No disorders were found for RIC3-DT Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RIC3-DT Gene

Publications for RIC3-DT Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

No data available for Mastermind for RIC3-DT Gene

Products for RIC3-DT Gene

Sources for RIC3-DT Gene