Aliases for RHOXF1-AS1 Gene

Subcategory (RNA class) for RHOXF1-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for RHOXF1-AS1 Gene

  • RHOXF1 Antisense RNA 1 2 3 5
  • RHOXF1-AS1 2 168
  • NONHSAG055210 92
  • HSALNG0139825 167

External Ids for RHOXF1-AS1 Gene

Summaries for RHOXF1-AS1 Gene

GeneCards Summary for RHOXF1-AS1 Gene

RHOXF1-AS1 (RHOXF1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for RHOXF1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RHOXF1-AS1 Gene

Genomics for RHOXF1-AS1 Gene

GeneHancer (GH) Regulatory Elements for RHOXF1-AS1 Gene

Promoters and enhancers for RHOXF1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XJ120036 Promoter/Enhancer 1.1 Ensembl ENCODE 506.8 +0.7 739 1.7 EP300 TRIM22 ZNF316 NANOG ARNT MEF2B NBN ELF1 IRF1 FOXA1 RHOXF1-AS1 piR-53338-145
GH0XJ120035 Enhancer 0.7 ENCODE 500.7 -0.4 -431 0.6 EP300 TRIM22 ARNT MEF2B NBN ELF1 IRF1 IRF4 IKZF1 BMI1 RHOXF1-AS1 piR-50129-289
GH0XJ120250 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 12.2 +215.3 215265 3 ZNF217 CTCF NRF1 POLR2G PHF8 ZFX POLR2A ZBTB10 CLOCK ZBTB11 ZBTB33 RHOXF1-AS1 RHOXF1 ENSG00000232042 lnc-ZBTB33-1 TMEM255A
GH0XJ120243 Promoter/Enhancer 1.7 Ensembl ENCODE CraniofacialAtlas 12.4 +208.3 208282 2.6 EP300 FOXK2 ZBTB40 ZNF217 NRF1 TCF12 POLR2G SP1 NCOR1 PHF8 NKAPP1 LINC01402 lnc-RHOXF1-3-003 RHOXF1-AS1 CUL4B CXorf56 RHOXF1 piR-31641-008
GH0XJ119941 Promoter/Enhancer 2.2 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas 6.6 -92.9 -92940 3 FOXK2 ZBTB40 ZNF217 ZSCAN5C TCF12 POLR2G NCOR1 PHF8 JUND SIX5 NKAP RHOXF1P3 RHOXF1-AS1 NKRF RHOXF1 RF00017-8655
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RHOXF1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RHOXF1-AS1 Gene

Genomic Locations for RHOXF1-AS1 Gene
chrX:120,036,236-120,146,855
(GRCh38/hg38)
Size:
110,620 bases
Orientation:
Plus strand

Genomic View for RHOXF1-AS1 Gene

Genes around RHOXF1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RHOXF1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RHOXF1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RHOXF1-AS1 Gene

Proteins for RHOXF1-AS1 Gene

Post-translational modifications for RHOXF1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RHOXF1-AS1 Gene

Domains & Families for RHOXF1-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RHOXF1-AS1 Gene

Function for RHOXF1-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RHOXF1-AS1 Gene

Localization for RHOXF1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RHOXF1-AS1 Gene

Pathways & Interactions for RHOXF1-AS1 Gene

PathCards logo

SuperPathways for RHOXF1-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for RHOXF1-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RHOXF1-AS1 Gene

Drugs & Compounds for RHOXF1-AS1 Gene

No Compound Related Data Available

Transcripts for RHOXF1-AS1 Gene

mRNA/cDNA for RHOXF1-AS1 Gene

6 RNACentral transcripts :
1 REFSEQ mRNAs :
4 NCBI additional mRNA sequence :
4 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 NONCODE transcripts :
1 LncBook transcripts :
4 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for RHOXF1-AS1 Gene

No ASD Table

Relevant External Links for RHOXF1-AS1 Gene

GeneLoc Exon Structure for
RHOXF1-AS1

Expression for RHOXF1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RHOXF1-AS1 Gene

genes like me logo Genes that share expression patterns with RHOXF1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RHOXF1-AS1 Gene

Orthologs for RHOXF1-AS1 Gene

Evolution for RHOXF1-AS1 Gene

ENSEMBL:
Gene Tree for RHOXF1-AS1 (if available)
TreeFam:
Gene Tree for RHOXF1-AS1 (if available)

No data available for Orthologs for RHOXF1-AS1 Gene

Paralogs for RHOXF1-AS1 Gene

No data available for Paralogs for RHOXF1-AS1 Gene

Variants for RHOXF1-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for RHOXF1-AS1 Gene

SNP ID Clinical significance and condition Chr 0X pos Variation AA Info Type
715990 Benign: not provided 120,109,232(+) C/T MISSENSE_VARIANT
777826 Benign: not provided 120,115,635(+) C/T SYNONYMOUS_VARIANT

Additional dbSNP identifiers (rs#s) for RHOXF1-AS1 Gene

Additional Variant Information for RHOXF1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RHOXF1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RHOXF1-AS1 Gene

Disorders for RHOXF1-AS1 Gene

Additional Disease Information for RHOXF1-AS1

No disorders were found for RHOXF1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RHOXF1-AS1 Gene

Publications for RHOXF1-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 54
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54
  3. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 54

Products for RHOXF1-AS1 Gene

Sources for RHOXF1-AS1 Gene