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RFPL1S Gene(RNA Gene)

RFPL1 Antisense RNA 1

GCID:
GC22M029436
GIFtS:
19
Genes Participants
UDN Logo

Aliases for RFPL1S Gene

Subcategory (RNA class) for RFPL1S Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for RFPL1S Gene

  • RFPL1 Antisense RNA 1 2 3 5
  • RFPL1 Antisense RNA 1 (Non-Protein Coding) 2 3
  • Non-Protein Coding RNA 6 2 3
  • NCRNA00006 3
  • RFPL1-AS1 3
  • RFPL1-AS 3
  • RFPL1AS 3

External Ids for RFPL1S Gene

Previous HGNC Symbols for RFPL1S Gene

  • RFPL1-AS1

Previous GeneCards Identifiers for RFPL1S Gene

  • GC22U990065
  • GC22M028163
  • GC22M029833

Summaries for RFPL1S Gene

GeneCards Summary for RFPL1S Gene

RFPL1S (RFPL1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for RFPL1S Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RFPL1S Gene

Genomics for RFPL1S Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for RFPL1S Gene

Promoters and enhancers for RFPL1S Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH22I029478 Enhancer 0.7 Ensembl 550.8 0.0 -26 0.4 BACH1 MAFG REST ZNF316 GLIS2 NFIC ZBTB48 VEZF1 NFE2 ZNF600 NEFH RFPL1S NIPSNAP1 THOC5
GH22I029419 Enhancer 0.8 Ensembl ENCODE 12.5 +58.1 58134 0.5 SOX6 NR2F1 CBFA2T3 ZEB2 TCF12 CTBP1 IKZF1 NR2C1 IKZF2 SPI1 RFPL1S AP1B1 ENSG00000242156 LOC102723305
GH22I029469 Enhancer 1.1 Ensembl ENCODE 6.2 +7.7 7714 1.3 PKNOX1 ATF1 ARID4B SIN3A ZNF2 ZNF48 ETS1 GLIS2 ZNF143 KLF7 RFPL1 THOC5 RFPL1S NIPSNAP1 PIR46787
GH22I029456 Enhancer 0.4 ENCODE 10.4 +21.6 21605 0.7 RFX1 BMI1 RFPL1S PIR46787 ENSG00000274457
GH22I029431 Enhancer 0.2 ENCODE 7.2 +46.1 46135 0.7 RFPL4AP6 NIPSNAP1 RFPL1S ENSG00000242156
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RFPL1S on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the RFPL1S gene promoter:

Genomic Locations for RFPL1S Gene

Genomic Locations for RFPL1S Gene
chr22:29,436,534-29,478,175
(GRCh38/hg38)
Size:
41,642 bases
Orientation:
Minus strand
chr22:29,832,818-29,874,164
(GRCh37/hg19)

Genomic View for RFPL1S Gene

Genes around RFPL1S on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RFPL1S Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RFPL1S Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for RFPL1S Gene

Proteins for RFPL1S Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for RFPL1S Gene

No Post-translational modifications

No data available for DME Specific Peptides for RFPL1S Gene

Domains & Families for RFPL1S Gene

Suggested Antigen Peptide Sequences for RFPL1S Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for RFPL1S Gene

Function for RFPL1S Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Molecular function for RFPL1S Gene

GENATLAS Biochemistry:
ret finger protein-like 1,antisense transcript,overlapping RFRL1

Phenotypes for RFPL1S Gene

GenomeRNAi human phenotypes for RFPL1S:
genes like me logo Genes that share phenotypes with RFPL1S: view

Animal Model Products

No data available for Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RFPL1S Gene

Localization for RFPL1S Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RFPL1S Gene

Pathways & Interactions for RFPL1S Gene

SuperPathways for RFPL1S Gene

PathCards logo More details on SuperPathways for RFPL1S
No Data Available

Interacting Proteins for RFPL1S Gene

Gene Ontology (GO) - Biological Process for RFPL1S Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RFPL1S Gene

Drugs & Compounds for RFPL1S Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for RFPL1S Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for RFPL1S Gene

(3) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RFPL1S Gene

RFPL1 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RFPL1S Gene

No ASD Table

Relevant External Links for RFPL1S Gene

GeneLoc Exon Structure for
RFPL1S
ECgene alternative splicing isoforms for
RFPL1S

Expression for RFPL1S Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RFPL1S Gene

mRNA expression in normal human tissues for RFPL1S Gene
mRNA expression by BioGPS for RFPL1S GenemRNA expression by GTEx for RFPL1S Gene

mRNA differential expression in normal tissues according to GTEx for RFPL1S Gene

This gene is overexpressed in Brain - Frontal Cortex (BA9) (x8.0), Brain - Anterior cingulate cortex (BA24) (x6.4), Brain - Cortex (x6.3), Brain - Hippocampus (x4.5), Brain - Amygdala (x4.4), Brain - Putamen (basal ganglia) (x4.1), and Brain - Nucleus accumbens (basal ganglia) (x4.0).

NURSA nuclear receptor signaling pathways regulating expression of RFPL1S Gene:

RFPL1S

SOURCE GeneReport for Unigene cluster for RFPL1S Gene:

Hs.167750
genes like me logo Genes that share expression patterns with RFPL1S: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RFPL1S Gene

Orthologs for RFPL1S Gene

Evolution for RFPL1S Gene

ENSEMBL:
Gene Tree for RFPL1S (if available)
TreeFam:
Gene Tree for RFPL1S (if available)

No data available for Orthologs for RFPL1S Gene

Paralogs for RFPL1S Gene

No data available for Paralogs for RFPL1S Gene

Variants for RFPL1S Gene

Sequence variations from dbSNP and Humsavar for RFPL1S Gene

SNP ID Clin Chr 22 pos Variation AA Info Type
rs1000744123 -- 29,439,404(-) C/G non_coding_transcript_variant
rs1001921686 -- 29,438,771(-) T/G non_coding_transcript_variant
rs1003019815 -- 29,436,942(-) G/A downstream_transcript_variant
rs1003484459 -- 29,443,492(-) G/T upstream_transcript_variant
rs1004263945 -- 29,442,816(-) TT/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for RFPL1S Gene

Variant ID Type Subtype PubMed ID
nsv1059994 CNV gain 25217958
nsv1060197 CNV gain 25217958
nsv1110864 OTHER inversion 24896259
nsv964618 CNV duplication 23825009
nsv979667 CNV duplication 23825009

Additional Variant Information for RFPL1S Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RFPL1S

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RFPL1S Gene

Disorders for RFPL1S Gene

Additional Disease Information for RFPL1S

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for RFPL1S Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RFPL1S Gene

Publications for RFPL1S Gene

  1. Duplications on human chromosome 22 reveal a novel Ret Finger Protein-like gene family with sense and endogenous antisense transcripts. (PMID: 10508838) Seroussi E … Dumanski JP (Genome research 1999) 2 3 22 58
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  3. A genome annotation-driven approach to cloning the human ORFeome. (PMID: 15461802) Collins JE … Dunham I (Genome biology 2004) 3 58
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for RFPL1S Gene

Sources for RFPL1S Gene

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