RF00619-030 Gene (RNA Gene)

 

GC04M088207
GIFtS:
2
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Aliases for RF00619-030 Gene

Subcategory (RNA class) for RF00619-030 Gene

snRNA

Number of RNA Genes sources:

1 / 17

Aliases for RF00619-030 Gene

No data available for External Ids for RF00619-030 Gene

Summaries for RF00619-030 Gene

GeneCards Summary for RF00619-030 Gene

RF00619-030 is an RNA Gene, and is affiliated with the snRNA class.

Rfam classification for RF00619-030 Gene

  • U6atac minor spliceosomal RNA

Additional gene information for RF00619-030 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RF00619-030 Gene

Genomics for RF00619-030 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for RF00619-030 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH04J088204 Enhancer 0.3 Ensembl 600.7 +1.8 1751 1.6 NR2F2 RF00619-030 RNU6ATAC31P piR-43105-497 PPM1K-DT ENSG00000249755 ABCG2 RF00026-803 RNU6-818P PKD2
GH04J088208 Enhancer 0.2 Ensembl 600.7 -1.8 -1849 0.4 RF00619-030 RNU6ATAC31P PPM1K-DT ENSG00000251285 lnc-PPM1K-2 ABCG2 PKD2
GH04J088212 Enhancer 0.8 Ensembl ENCODE 0.4 -5.7 -5749 1 CTCF PRDM10 REST RAD21 TRIM22 RAD51 SMC3 ZNF654 RB1 DMAP1 HERC5 RNU6ATAC31P RF00619-030 ENSG00000251285 lnc-PPM1K-2 ABCG2 PKD2
GH04J088219 Enhancer 0.7 Ensembl 0.4 -12.8 -12751 0.6 CTCF TFE3 REST RAD21 TRIM22 TOE1 MGA USF1 ZNF592 SMC3 HERC3 PIGY PYURF ENSG00000249755 HERC6 RNU6-112P PPM1K PPM1K-DT ENSG00000251285 lnc-PPM1K-2
GH04J088213 Enhancer 0.2 Ensembl 0.4 -6.8 -6849 0.4 PPM1K-DT RNU6ATAC31P RF00619-030 ENSG00000251285 lnc-PPM1K-2 ABCG2 PKD2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RF00619-030 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RF00619-030 Gene

Genomic Locations for RF00619-030 Gene
chr4:88,206,427-88,206,552
(GRCh38/hg38)
Size:
126 bases
Orientation:
Minus strand

Genomic View for RF00619-030 Gene

Genes around RF00619-030 on UCSC Golden Path with GeneCards custom track
RF00619-030 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

RF00619-030 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RF00619-030 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for RF00619-030 Gene

Proteins for RF00619-030 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for RF00619-030 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RF00619-030 Gene

Domains & Families for RF00619-030 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RF00619-030 Gene

Function for RF00619-030 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RF00619-030 Gene

Localization for RF00619-030 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RF00619-030 Gene

Pathways & Interactions for RF00619-030 Gene

PathCards logo

SuperPathways for RF00619-030 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RF00619-030 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RF00619-030 Gene

Drugs & Compounds for RF00619-030 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for RF00619-030 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for RF00619-030 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00006534CE_9606 snRNA 126 1

Rfam: RF00619,

RF00619-030 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for RF00619-030 Gene

No ASD Table

Relevant External Links for RF00619-030 Gene

GeneLoc Exon Structure for
RF00619-030

No data available for mRNA/cDNA for RF00619-030 Gene

Expression for RF00619-030 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RF00619-030 Gene

Orthologs for RF00619-030 Gene

No data available for Orthologs and Evolution for RF00619-030 Gene

Paralogs for RF00619-030 Gene

No data available for Paralogs for RF00619-030 Gene

Variants for RF00619-030 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for RF00619-030 Gene

Disorders for RF00619-030 Gene

No disorders were found for RF00619-030 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RF00619-030 Gene

Publications for RF00619-030 Gene

No publications were found for RF00619-030 Gene.

No data available for Mastermind for RF00619-030 Gene

Products for RF00619-030 Gene

Sources for RF00619-030 Gene