Aliases for RF00619-005 Gene

Subcategory (RNA class) for RF00619-005 Gene

snRNA

Number of RNA Genes sources:

1 / 17

Aliases for RF00619-005 Gene

No data available for External Ids for RF00619-005 Gene

Summaries for RF00619-005 Gene

GeneCards Summary for RF00619-005 Gene

RF00619-005 is an RNA Gene, and is affiliated with the snRNA class.

Rfam classification for RF00619-005 Gene

  • U6atac minor spliceosomal RNA

Additional gene information for RF00619-005 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RF00619-005 Gene

Genomics for RF00619-005 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RF00619-005 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J010392 Enhancer 0.9 Ensembl ENCODE 0.7 +2.7 2716 12.8 CREB1 FOXA1 ZIC2 REST CEBPB SP1 JUND RUNX3 ATF3 RAD51 CTR9 AMPD3 RF00619-005 RNU6ATAC33P piR-31432-072 piR-40154-026 piR-52261-042 piR-49423-038 piR-53431-074 piR-40163-013
GH11J010405 Enhancer 1.1 Ensembl ENCODE 0.4 -7.8 -7784 3 CTCF PRDM10 ZNF629 IKZF1 ZNF692 JUND PHF21A PKNOX1 PATZ1 REST AMPD3 WEE1 RNU6ATAC33P RF00619-005 piR-40110-081 CAND1.11 MTRNR2L8
GH11J010408 Enhancer 0.8 Ensembl ENCODE 0.4 -10.8 -10784 2.6 REST GABPA CTBP1 FOXA2 NFIC CEBPG BHLHE40 CEBPB NRF1 RARA AMPD3 RF00619-005 RNU6ATAC33P piR-40110-081 MTRNR2L8 CAND1.11
GH11J010413 Enhancer 0.8 FANTOM5 ENCODE 0.4 -15.1 -15123 2.2 REST RAD21 CTCF CTBP1 RUNX3 NFE2 ZNF316 MAFG MAFK SMC3 AMPD3 CTR9 IRAG1-AS1 RNF141 LYVE1 IRAG1 SBF2 EIF4G2 ZBED5 ADM
GH11J010411 Enhancer 0.2 Ensembl 0.4 -12.9 -12883 1.2 AMPD3 WEE1 RF00619-005 RNU6ATAC33P piR-40110-081 MTRNR2L8 CAND1.11
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RF00619-005 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RF00619-005 Gene

Genomic Locations for RF00619-005 Gene
chr11:10,399,192-10,399,317
(GRCh38/hg38)
Size:
126 bases
Orientation:
Minus strand

Genomic View for RF00619-005 Gene

Genes around RF00619-005 on UCSC Golden Path with GeneCards custom track
RF00619-005 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

RF00619-005 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RF00619-005 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for RF00619-005 Gene

Proteins for RF00619-005 Gene

Post-translational modifications for RF00619-005 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RF00619-005 Gene

Domains & Families for RF00619-005 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RF00619-005 Gene

Function for RF00619-005 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RF00619-005 Gene

Localization for RF00619-005 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RF00619-005 Gene

Pathways & Interactions for RF00619-005 Gene

PathCards logo

SuperPathways for RF00619-005 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RF00619-005 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RF00619-005 Gene

Drugs & Compounds for RF00619-005 Gene

No Compound Related Data Available

Transcripts for RF00619-005 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for RF00619-005 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000069872F_9606 snRNA 126 1

Rfam: RF00619,

RF00619-005 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for RF00619-005 Gene

No ASD Table

Relevant External Links for RF00619-005 Gene

GeneLoc Exon Structure for
RF00619-005

No data available for mRNA/cDNA for RF00619-005 Gene

Expression for RF00619-005 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RF00619-005 Gene

Orthologs for RF00619-005 Gene

No data available for Orthologs and Evolution for RF00619-005 Gene

Paralogs for RF00619-005 Gene

No data available for Paralogs for RF00619-005 Gene

Variants for RF00619-005 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for RF00619-005 Gene

Disorders for RF00619-005 Gene

No disorders were found for RF00619-005 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RF00619-005 Gene

Publications for RF00619-005 Gene

No publications were found for RF00619-005 Gene.

No data available for Mastermind for RF00619-005 Gene

Products for RF00619-005 Gene

Sources for RF00619-005 Gene