RF00487-003 Gene (RNA Gene)

 

GC0XP018534
GIFtS:
1
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Aliases for RF00487-003 Gene

Subcategory (RNA class) for RF00487-003 Gene

misc_RNA

Number of RNA Genes sources:

1 / 17

Aliases for RF00487-003 Gene

No data available for External Ids for RF00487-003 Gene

Summaries for RF00487-003 Gene

GeneCards Summary for RF00487-003 Gene

RF00487-003 is an RNA Gene, and is affiliated with the misc_RNA class.

Rfam classification for RF00487-003 Gene

  • Connexin-43 internal ribosome entry site (IRES)

Additional gene information for RF00487-003 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RF00487-003 Gene

Genomics for RF00487-003 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for RF00487-003 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH0XJ018535 Enhancer 0.2 Ensembl 600.7 +1.1 1134 0.8 GJA6P RF00487-003 lnc-PPEF1-5 CDKL5 RS1
GH0XJ018537 Enhancer 0.6 Ensembl 0.7 +2.7 2734 0.4 POLR2A IKZF2 EED RUNX3 ELF1 JUNB BATF EBF1 TBP FEZF1 RF00487-003 lnc-PPEF1-5 CDKL5 RS1
GH0XJ018543 Enhancer 0.6 Ensembl 0.4 +10.4 10433 3 SP1 FOXA2 JUND TBX3 SPI1 HNF4A NFIL3 RXRA RARA HNF4G ADGRG2 lnc-PPEF1-5 RF00487-003 CDKL5 RS1
GH0XJ018542 Enhancer 0.3 Ensembl 0.4 +7.4 7434 0.2 EZH2 RF00487-003 lnc-PPEF1-5 CDKL5 RS1
GH0XJ018544 Enhancer 0.3 Ensembl 0.4 +8.0 8034 0.2 EZH2 RF00487-003 lnc-PPEF1-5 CDKL5 RS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RF00487-003 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RF00487-003 Gene

Genomic Locations for RF00487-003 Gene
chrX:18,534,867-18,535,067
(GRCh38/hg38)
Size:
201 bases
Orientation:
Plus strand

Genomic View for RF00487-003 Gene

Genes around RF00487-003 on UCSC Golden Path with GeneCards custom track
RF00487-003 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

RF00487-003 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RF00487-003 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for RF00487-003 Gene

Proteins for RF00487-003 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for RF00487-003 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RF00487-003 Gene

Domains & Families for RF00487-003 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RF00487-003 Gene

Function for RF00487-003 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RF00487-003 Gene

Localization for RF00487-003 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RF00487-003 Gene

Pathways & Interactions for RF00487-003 Gene

PathCards logo

SuperPathways for RF00487-003 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RF00487-003 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RF00487-003 Gene

Drugs & Compounds for RF00487-003 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for RF00487-003 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for RF00487-003 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000D85898_9606 other 201 1

Rfam: RF00487,

RF00487-003 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for RF00487-003 Gene

No ASD Table

Relevant External Links for RF00487-003 Gene

GeneLoc Exon Structure for
RF00487-003

No data available for mRNA/cDNA for RF00487-003 Gene

Expression for RF00487-003 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RF00487-003 Gene

Orthologs for RF00487-003 Gene

No data available for Orthologs and Evolution for RF00487-003 Gene

Paralogs for RF00487-003 Gene

No data available for Paralogs for RF00487-003 Gene

Variants for RF00487-003 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for RF00487-003 Gene

Disorders for RF00487-003 Gene

No disorders were found for RF00487-003 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RF00487-003 Gene

Publications for RF00487-003 Gene

No publications were found for RF00487-003 Gene.

No data available for Mastermind for RF00487-003 Gene

Products for RF00487-003 Gene

Sources for RF00487-003 Gene