Aliases for RF00387 Gene

Subcategory (RNA class) for RF00387 Gene

misc_RNA

Number of RNA Genes sources:

1 / 14

Aliases for RF00387 Gene

No data available for External Ids for RF00387 Gene

Summaries for RF00387 Gene

GeneCards Summary for RF00387 Gene

RF00387 is an RNA Gene, and is affiliated with the misc_RNA class.

Rfam classification for RF00387 Gene

  • FGF-1 internal ribosome entry site (IRES)

Additional gene information for RF00387 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RF00387 Gene

Genomics for RF00387 Gene

GeneHancer (GH) Regulatory Elements for RF00387 Gene

Promoters and enhancers for RF00387 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J142695 Promoter/Enhancer 1.7 EPDnew Ensembl ENCODE dbSUPER 500.7 +0.1 123 3.4 ZNF217 CTCF REST ZBTB25 MYC RAD21 EP300 TRIM22 ATF2 SMC3 FGF1 RF00387 lnc-SPRY4-5 DELE1 FJ601684-391 SPRY4-AS1
GH05J142684 Promoter/Enhancer 1.4 EPDnew Ensembl ENCODE dbSUPER 0.4 +12.3 12272 3 ZIC2 RFX1 FOXA2 SAP130 ZFHX2 EGR2 NANOG PRDM10 ASH2L RFX3 FGF1 RF00387 lnc-SPRY4-5 FJ601684-391 SPRY4-AS1
GH05J142680 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 +16.7 16723 1.8 ZNF217 TCF12 JUND FOS KLF4 SKI TEAD1 CTBP1 FOXA2 SMARCC1 FGF1 lnc-SPRY4-5 RF00387 FJ601684-391 SPRY4-AS1
GH05J142655 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.3 +42.3 42337 1.7 CTCF REST RAD21 TRIM22 SMC3 FOXA2 ZBTB17 SAP130 GABPB1 NR2F2 FJ601684-391 RF00387 lnc-SPRY4-5 FGF1 SPRY4-AS1
GH05J142673 Enhancer 0.8 Ensembl ENCODE dbSUPER 0.4 +22.6 22630 3.4 JUND REST FOS SMARCA4 JUN HLF POLR2A FOXA2 FGF1 RF00387 lnc-SPRY4-5 FJ601684-391 SPRY4-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RF00387 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RF00387 Gene

Genomic Locations for RF00387 Gene
chr5:142,697,633-142,697,800
(GRCh38/hg38)
Size:
168 bases
Orientation:
Minus strand

Genomic View for RF00387 Gene

Genes around RF00387 on UCSC Golden Path with GeneCards custom track

RF00387 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RF00387 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for RF00387 Gene

Proteins for RF00387 Gene

Post-translational modifications for RF00387 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RF00387 Gene

Domains & Families for RF00387 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RF00387 Gene

Function for RF00387 Gene

Phenotypes From GWAS Catalog for RF00387 Gene

miRNA for RF00387 Gene

miRTarBase miRNAs that target RF00387

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for RF00387 Gene

Localization for RF00387 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RF00387 Gene

Pathways & Interactions for RF00387 Gene

PathCards logo

SuperPathways for RF00387 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for RF00387 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RF00387 Gene

Drugs & Compounds for RF00387 Gene

No Compound Related Data Available

Transcripts for RF00387 Gene

mRNA/cDNA for RF00387 Gene

1 RNACentral transcripts :
1 Rfam transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for RF00387 Gene

No ASD Table

Relevant External Links for RF00387 Gene

GeneLoc Exon Structure for
RF00387

Expression for RF00387 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RF00387 Gene

Orthologs for RF00387 Gene

No data available for Orthologs and Evolution for RF00387 Gene

Paralogs for RF00387 Gene

No data available for Paralogs for RF00387 Gene

Variants for RF00387 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for RF00387 Gene

Disorders for RF00387 Gene

No disorders were found for RF00387 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RF00387 Gene

Publications for RF00387 Gene

No publications were found for RF00387 Gene.

No data available for Mastermind for RF00387 Gene

Products for RF00387 Gene

Sources for RF00387 Gene