RF00066-089 Gene (RNA Gene)

 

GC18P003094
GIFtS:
3
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Aliases for RF00066-089 Gene

Subcategory (RNA class) for RF00066-089 Gene

snRNA

Number of RNA Genes sources:

1 / 17

Aliases for RF00066-089 Gene

No data available for External Ids for RF00066-089 Gene

Summaries for RF00066-089 Gene

GeneCards Summary for RF00066-089 Gene

RF00066-089 is an RNA Gene, and is affiliated with the snRNA class.

Rfam classification for RF00066-089 Gene

Additional gene information for RF00066-089 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RF00066-089 Gene

Genomics for RF00066-089 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for RF00066-089 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH18J003096 Enhancer 0.5 Ensembl 600.7 +0.7 733 0.2 FOXA1 PRDM1 ZBTB17 SCRT1 ZNF335 FEZF1 PRDM6 RF00066-089 RNU7-25P LPIN2 ENSG00000252258 MYOM1 EMILIN2 lnc-LPIN2-3
GH18J003092 Enhancer 0.3 Ensembl 600.7 -0.7 -667 0.2 ZNF558 RF00066-089 RNU7-25P LPIN2 ENSG00000252258 MYOM1 EMILIN2 piR-53431-291
GH18J003087 Enhancer 0.8 Ensembl ENCODE 0.7 -4.7 -4694 2.5 ZNF692 PKNOX1 SP1 ZBTB44 CEBPB ZNF316 MAFF MAFK JUND MAFG ENSG00000252258 LPIN2 RF00066-089 RNU7-25P piR-53431-291 MYOM1
GH18J003056 Enhancer 1.4 FANTOM5 ENCODE dbSUPER 0.3 -33.3 -33343 6.9 HNRNPL GATAD2A CTCF TFE3 RCOR2 JUND FOXA1 GABPA ZNF143 RBFOX2 LPIN2 ENSG00000252258 MYOM1 EMILIN2 MYL12B SMCHD1 METTL4 piR-53431-291 RF00066-089 RNU7-25P
GH18J003073 Enhancer 1.1 Ensembl ENCODE CraniofacialAtlas 0.4 -19.6 -19566 2 GATAD2A PRDM10 RCOR2 RXRB NR2C1 GABPA CEBPA SOX13 EGR1 MAX LPIN2 ENSG00000252258 MYOM1 EMILIN2 RF00066-089 RNU7-25P piR-53431-291
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RF00066-089 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RF00066-089 Gene

Genomic Locations for RF00066-089 Gene
chr18:3,093,568-3,093,629
(GRCh38/hg38)
Size:
62 bases
Orientation:
Plus strand

Genomic View for RF00066-089 Gene

Genes around RF00066-089 on UCSC Golden Path with GeneCards custom track
RF00066-089 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

RF00066-089 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RF00066-089 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for RF00066-089 Gene

Proteins for RF00066-089 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for RF00066-089 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RF00066-089 Gene

Domains & Families for RF00066-089 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RF00066-089 Gene

Function for RF00066-089 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for RF00066-089 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RF00066-089 Gene

Localization for RF00066-089 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RF00066-089 Gene

Pathways & Interactions for RF00066-089 Gene

PathCards logo

SuperPathways for RF00066-089 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RF00066-089 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RF00066-089 Gene

Drugs & Compounds for RF00066-089 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for RF00066-089 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for RF00066-089 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000066F081_9606 snRNA 62 1

Rfam: RF00066,

RF00066-089 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for RF00066-089 Gene

No ASD Table

Relevant External Links for RF00066-089 Gene

GeneLoc Exon Structure for
RF00066-089

No data available for mRNA/cDNA for RF00066-089 Gene

Expression for RF00066-089 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RF00066-089 Gene

Orthologs for RF00066-089 Gene

No data available for Orthologs and Evolution for RF00066-089 Gene

Paralogs for RF00066-089 Gene

No data available for Paralogs for RF00066-089 Gene

Variants for RF00066-089 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for RF00066-089 Gene

Disorders for RF00066-089 Gene

No disorders were found for RF00066-089 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RF00066-089 Gene

Publications for RF00066-089 Gene

No publications were found for RF00066-089 Gene.

No data available for Mastermind for RF00066-089 Gene

Products for RF00066-089 Gene

Sources for RF00066-089 Gene