RF00066-050 Gene (RNA Gene)

 

GC12M089283
GIFtS:
3
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Aliases for RF00066-050 Gene

Subcategory (RNA class) for RF00066-050 Gene

snRNA

Number of RNA Genes sources:

1 / 17

Aliases for RF00066-050 Gene

No data available for External Ids for RF00066-050 Gene

Summaries for RF00066-050 Gene

GeneCards Summary for RF00066-050 Gene

RF00066-050 is an RNA Gene, and is affiliated with the snRNA class.

Rfam classification for RF00066-050 Gene

Additional gene information for RF00066-050 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RF00066-050 Gene

Genomics for RF00066-050 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for RF00066-050 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH12J089280 Enhancer 0.9 Ensembl ENCODE dbSUPER 600.7 +0.7 684 3.2 GABPA ZNF316 MAFF MAFG POLR2A SPI1 MAFK SMARCA4 HLF EMSY RF00066-050 RNU7-120P KITLG LINC02458 piR-38351-108 DUSP6
GH12J089243 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 0.3 +33.6 33584 11.4 ZIC2 POLR2A ZNF24 GABPA SOX13 MGA ZBTB20 GTF2E2 ZNF766 CEBPB DUSP6 ATP2B1 RNU7-120P POC1B piR-38351-108 RF00066-050 LINC02458 KITLG
GH12J089279 Enhancer 0.6 Ensembl dbSUPER 0.7 +3.3 3287 1.6 POLR2A RCOR1 CTCF ZNF146 CHD2 GATA2 DUSP6 RF00066-050 RNU7-120P LINC02458 piR-38351-108 KITLG
GH12J089262 Enhancer 0.8 Ensembl dbSUPER 0.4 +20.1 20084 0.8 REST FOXA1 SP1 FOXA2 ZSCAN5C ATF3 YY1 ZBTB33 JUND NR2F2 RF00066-050 RNU7-120P piR-38351-108 LINC02458 DUSP6 KITLG
GH12J089235 Enhancer 1.1 FANTOM5 ENCODE dbSUPER 0.3 +46.3 46266 1.7 ETV6 EP300 GTF2E2 ZNF766 NFE2 NR2C2 GABPA MEF2D NR2F2 ZNF644 DUSP6 RNU7-120P ATP2B1 piR-38351-108 RF00066-050 LINC02458 KITLG
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RF00066-050 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RF00066-050 Gene

Genomic Locations for RF00066-050 Gene
chr12:89,282,223-89,282,285
(GRCh38/hg38)
Size:
63 bases
Orientation:
Minus strand

Genomic View for RF00066-050 Gene

Genes around RF00066-050 on UCSC Golden Path with GeneCards custom track
RF00066-050 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

RF00066-050 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RF00066-050 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for RF00066-050 Gene

Proteins for RF00066-050 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for RF00066-050 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RF00066-050 Gene

Domains & Families for RF00066-050 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RF00066-050 Gene

Function for RF00066-050 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for RF00066-050 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RF00066-050 Gene

Localization for RF00066-050 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RF00066-050 Gene

Pathways & Interactions for RF00066-050 Gene

PathCards logo

SuperPathways for RF00066-050 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RF00066-050 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RF00066-050 Gene

Drugs & Compounds for RF00066-050 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for RF00066-050 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for RF00066-050 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00006F2306_9606 snRNA 63 1

Rfam: RF00066,

RF00066-050 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for RF00066-050 Gene

No ASD Table

Relevant External Links for RF00066-050 Gene

GeneLoc Exon Structure for
RF00066-050

No data available for mRNA/cDNA for RF00066-050 Gene

Expression for RF00066-050 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RF00066-050 Gene

Orthologs for RF00066-050 Gene

No data available for Orthologs and Evolution for RF00066-050 Gene

Paralogs for RF00066-050 Gene

No data available for Paralogs for RF00066-050 Gene

Variants for RF00066-050 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for RF00066-050 Gene

Disorders for RF00066-050 Gene

No disorders were found for RF00066-050 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RF00066-050 Gene

Publications for RF00066-050 Gene

No publications were found for RF00066-050 Gene.

No data available for Mastermind for RF00066-050 Gene

Products for RF00066-050 Gene

Sources for RF00066-050 Gene