Aliases for RF00066-048 Gene

Subcategory (RNA class) for RF00066-048 Gene

snRNA

Number of RNA Genes sources:

1 / 17

Aliases for RF00066-048 Gene

No data available for External Ids for RF00066-048 Gene

Summaries for RF00066-048 Gene

GeneCards Summary for RF00066-048 Gene

RF00066-048 is an RNA Gene, and is affiliated with the snRNA class.

Rfam classification for RF00066-048 Gene

Additional gene information for RF00066-048 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RF00066-048 Gene

Genomics for RF00066-048 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RF00066-048 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J068911 Enhancer 0.4 FANTOM5 dbSUPER 600.7 0.0 -33 0.1 ENSG00000257289 RF00066-048 RNU7-4P lnc-MDM2-1 CPM LYZ RAP1B piR-53360-002 MDM2
GH12J068897 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 -13.7 -13721 3.6 GATAD2A REST CTCF RCOR2 RXRB IRF2 IKZF2 SP1 CEBPA SOX13 RAB3IP piR-53360-002 RF00066-048 RNU7-4P CPM MDM2
GH12J068903 Enhancer 1 Ensembl ENCODE dbSUPER 0.4 -7.7 -7720 4.8 ATF7 SOX6 TCF12 EP300 PAX8 TRIM24 NCOR1 NFIC STAT5A TAL1 RNU7-4P RF00066-048 piR-53360-002 CPM MDM2
GH12J068889 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.4 -21.5 -21520 1.6 SP1 GABPA FOXK2 NR2F2 SPI1 ELF1 NRF1 GABPB1 NR3C1 piR-53360-002 RNU7-4P RF00066-048 CPM MDM2
GH12J068891 Enhancer 0.3 Ensembl dbSUPER 0.4 -20.0 -20020 0.2 RNU7-4P piR-53360-002 RF00066-048 CPM MDM2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RF00066-048 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RF00066-048 Gene

Genomic Locations for RF00066-048 Gene
chr12:68,911,921-68,911,982
(GRCh38/hg38)
Size:
62 bases
Orientation:
Plus strand

Genomic View for RF00066-048 Gene

Genes around RF00066-048 on UCSC Golden Path with GeneCards custom track
RF00066-048 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

RF00066-048 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RF00066-048 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for RF00066-048 Gene

Proteins for RF00066-048 Gene

Post-translational modifications for RF00066-048 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RF00066-048 Gene

Domains & Families for RF00066-048 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RF00066-048 Gene

Function for RF00066-048 Gene

Phenotypes From GWAS Catalog for RF00066-048 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RF00066-048 Gene

Localization for RF00066-048 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RF00066-048 Gene

Pathways & Interactions for RF00066-048 Gene

PathCards logo

SuperPathways for RF00066-048 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RF00066-048 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RF00066-048 Gene

Drugs & Compounds for RF00066-048 Gene

No Compound Related Data Available

Transcripts for RF00066-048 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for RF00066-048 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00006C2B28_9606 snRNA 62 1

Rfam: RF00066,

RF00066-048 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for RF00066-048 Gene

No ASD Table

Relevant External Links for RF00066-048 Gene

GeneLoc Exon Structure for
RF00066-048

No data available for mRNA/cDNA for RF00066-048 Gene

Expression for RF00066-048 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RF00066-048 Gene

Orthologs for RF00066-048 Gene

No data available for Orthologs and Evolution for RF00066-048 Gene

Paralogs for RF00066-048 Gene

No data available for Paralogs for RF00066-048 Gene

Variants for RF00066-048 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for RF00066-048 Gene

Disorders for RF00066-048 Gene

No disorders were found for RF00066-048 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RF00066-048 Gene

Publications for RF00066-048 Gene

No publications were found for RF00066-048 Gene.

No data available for Mastermind for RF00066-048 Gene

Products for RF00066-048 Gene

Sources for RF00066-048 Gene