RF00066-041 Gene (RNA Gene)

 

GC11M113865
GIFtS:
3
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Aliases for RF00066-041 Gene

Data sources for RF00066-041 Gene:

Subcategory (RNA class) for RF00066-041 Gene

snRNA

Aliases for RF00066-041 Gene

No data available for External Ids for RF00066-041 Gene

Summaries for RF00066-041 Gene

GeneCards Summary for RF00066-041 Gene

RF00066-041 is an RNA Gene, and is affiliated with the snRNA class.

Rfam classification for RF00066-041 Gene

Additional gene information for RF00066-041 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RF00066-041 Gene

Genomics for RF00066-041 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for RF00066-041 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH11J113868 Enhancer 0.6 Ensembl ENCODE 250.7 -1.8 -1799 2.2 RXRA HNF4A CEBPG CEBPB RF00066-041 ATF4P4 USP28 lnc-USP28-3 CLDN25
GH11J113864 Enhancer 0.2 Ensembl 250.7 +1.2 1212 0.2 RF00066-041 LRRC37A13P RF00026-204 RNU6-1107P USP28 lnc-USP28-3 CLDN25
GH11J113872 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas 0.4 -9.5 -9480 4.8 TBP FEZF1 MNT SMAD5 IRF2 HES1 ZFP64 MBD2 POLR2A BHLHE40 USP28 lnc-HTR3B-3 ENSG00000270179 RBM7 NXPE4 TTC12 ZW10 NXPE1 LRRC37A13P RF00066-041
GH11J113858 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.7 +4.5 4531 5.2 FOXA2 MAFF PRDM6 SOX5 KDM1A POU5F1 EGR2 ZBTB17 SOX13 CREB1 RF00026-204 RNU6-1107P ATF4P4 NNMT LRRC37A13P RF00066-041 USP28 lnc-USP28-3 CLDN25
GH11J113869 Enhancer 0.2 Ensembl 0.7 -3.9 -3888 1.2 ATF4P4 RF00066-041 USP28 lnc-USP28-3 CLDN25
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RF00066-041 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RF00066-041 Gene

Latest Assembly
chr11:113,865,252-113,865,313
(GRCh38/hg38)
Size:
62 bases
Orientation:
Minus strand

Genomic View for RF00066-041 Gene

Genes around RF00066-041 on UCSC Golden Path with GeneCards custom track
RF00066-041 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

RF00066-041 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RF00066-041 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for RF00066-041 Gene

Proteins for RF00066-041 Gene

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  1. Antibodies for research
  2. Protein products for research
  3. Assay products for research

Post-translational modifications for RF00066-041 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RF00066-041 Gene

Domains & Families for RF00066-041 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RF00066-041 Gene

Function for RF00066-041 Gene

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  1. Animal Models for research
  2. CRISPR products for research
  3. miRNA products for research
  4. Inhibitory RNAs for research
  5. Clone products for research
  6. Cell Lines for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RF00066-041 Gene

Localization for RF00066-041 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RF00066-041 Gene

Pathways & Interactions for RF00066-041 Gene

PathCards logo

SuperPathways for RF00066-041 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RF00066-041 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RF00066-041 Gene

Drugs & Compounds for RF00066-041 Gene

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  1. Drug products for research
No Compound Related Data Available

Transcripts for RF00066-041 Gene

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  1. CRISPR products for research
  2. miRNA products for research
  3. Inhibitory RNAs for research
  4. Clone products for research

Non-coding RNA (ncRNA) Transcripts from RNAcentral for RF00066-041 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00006B0091_9606 snRNA 62 1

Rfam: RF00066,

RF00066-041 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for RF00066-041 Gene

No ASD Table

Relevant External Links for RF00066-041 Gene

GeneLoc Exon Structure for
RF00066-041

No data available for mRNA/cDNA for RF00066-041 Gene

Expression for RF00066-041 Gene

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  1. Primer products for research
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RF00066-041 Gene

Orthologs for RF00066-041 Gene

No data available for Orthologs and Evolution for RF00066-041 Gene

Paralogs for RF00066-041 Gene

No data available for Paralogs for RF00066-041 Gene

Variants for RF00066-041 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for RF00066-041 Gene

Disorders for RF00066-041 Gene

No disorders were found for RF00066-041 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RF00066-041 Gene

Publications for RF00066-041 Gene

No publications were found for RF00066-041 Gene.

No data available for Mastermind for RF00066-041 Gene

Products for RF00066-041 Gene

Sources for RF00066-041 Gene