Aliases for RF00020-023 Gene

Subcategory (RNA class) for RF00020-023 Gene

snRNA

Number of RNA Genes sources:

1 / 17

Aliases for RF00020-023 Gene

No data available for External Ids for RF00020-023 Gene

Summaries for RF00020-023 Gene

GeneCards Summary for RF00020-023 Gene

RF00020-023 is an RNA Gene, and is affiliated with the snRNA class.

Rfam classification for RF00020-023 Gene

Additional gene information for RF00020-023 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RF00020-023 Gene

Genomics for RF00020-023 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RF00020-023 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J081351 Enhancer 0.7 Ensembl ENCODE 0.4 +17.6 17550 0.5 CTCF FOXA1 REST RAD21 TRIM22 SMC3 ZNF654 ZNF143 SMARCA4 KLF16 PRKG2 RNU5A-2P RF00020-023 RF01061-128 RASGEF1B
GH04J081313 Enhancer 0.6 Ensembl ENCODE 0.4 -19.3 -19296 2.7 ESR1 ZNF318 BHLHE40 GLIS1 SPI1 PRKG2 RNU5A-2P RF00020-023 piR-56580-034 RASGEF1B
GH04J081378 Enhancer 0.6 Ensembl ENCODE 0.3 +45.8 45777 3.6 SCRT2 ZBTB44 WT1 FEZF1 PRDM6 ZBTB40 PRKG2 RASGEF1B RF01061-128 RF00020-023 RNU5A-2P
GH04J081346 Enhancer 0.3 ENCODE 0.4 +13.8 13792 2.5 SMARCA4 PRKG2 RF00020-023 RNU5A-2P RF01061-128 RASGEF1B
GH04J081352 Enhancer 0.3 Ensembl 0.4 +16.8 16798 0.2 HLF RNU5A-2P RF00020-023 RF01061-128 PRKG2 RASGEF1B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RF00020-023 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RF00020-023 Gene

Genomic Locations for RF00020-023 Gene
chr4:81,334,303-81,334,418
(GRCh38/hg38)
Size:
116 bases
Orientation:
Plus strand

Genomic View for RF00020-023 Gene

Genes around RF00020-023 on UCSC Golden Path with GeneCards custom track
RF00020-023 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

RF00020-023 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RF00020-023 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for RF00020-023 Gene

Proteins for RF00020-023 Gene

Post-translational modifications for RF00020-023 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RF00020-023 Gene

Domains & Families for RF00020-023 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RF00020-023 Gene

Function for RF00020-023 Gene

Phenotypes From GWAS Catalog for RF00020-023 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RF00020-023 Gene

Localization for RF00020-023 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RF00020-023 Gene

Pathways & Interactions for RF00020-023 Gene

PathCards logo

SuperPathways for RF00020-023 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RF00020-023 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RF00020-023 Gene

Drugs & Compounds for RF00020-023 Gene

No Compound Related Data Available

Transcripts for RF00020-023 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for RF00020-023 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00006CD54D_9606 snRNA 116 1

Rfam: RF00020,

RF00020-023 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for RF00020-023 Gene

No ASD Table

Relevant External Links for RF00020-023 Gene

GeneLoc Exon Structure for
RF00020-023

No data available for mRNA/cDNA for RF00020-023 Gene

Expression for RF00020-023 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RF00020-023 Gene

Orthologs for RF00020-023 Gene

No data available for Orthologs and Evolution for RF00020-023 Gene

Paralogs for RF00020-023 Gene

No data available for Paralogs for RF00020-023 Gene

Variants for RF00020-023 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for RF00020-023 Gene

Disorders for RF00020-023 Gene

No disorders were found for RF00020-023 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RF00020-023 Gene

Publications for RF00020-023 Gene

No publications were found for RF00020-023 Gene.

No data available for Mastermind for RF00020-023 Gene

Products for RF00020-023 Gene

Sources for RF00020-023 Gene