Aliases for RF00020-005 Gene

Subcategory (RNA class) for RF00020-005 Gene

snRNA

Number of RNA Genes sources:

1 / 14

Aliases for RF00020-005 Gene

No data available for External Ids for RF00020-005 Gene

Summaries for RF00020-005 Gene

GeneCards Summary for RF00020-005 Gene

RF00020-005 is an RNA Gene, and is affiliated with the snRNA class.

Rfam classification for RF00020-005 Gene

Additional gene information for RF00020-005 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RF00020-005 Gene

Genomics for RF00020-005 Gene

GeneHancer (GH) Regulatory Elements for RF00020-005 Gene

Promoters and enhancers for RF00020-005 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J210371 Promoter/Enhancer 1.4 Ensembl ENCODE 500.7 +0.6 605 3.4 EP300 FOXK2 CTCF MYC TCF12 USF1 POLR2G NCOR1 GTF2E2 JUND RF00020-005 RNU5A-8P RCOR3 SERTAD4-AS1 SERTAD4 ST13P19 HHAT ENSG00000287354
GH01J210369 Promoter/Enhancer 0.8 EPDnew Ensembl 0.7 +4.7 4666 0.8 USF1 TEAD4 ZIC2 ZNF664 MAX HHAT SERTAD4 SERTAD4-AS1 ENSG00000287354 RF00020-005 RNU5A-8P
GH01J210376 Enhancer 0.7 Ensembl ENCODE 0.7 -3.8 -3814 3.2 JUND GATA3 PRDM6 FOS POLR2A PKNOX1 ZNF770 FOXA1 HHAT RF00020-005 RNU5A-8P ENSG00000287157
GH01J210366 Enhancer 0.9 Ensembl ENCODE 0.4 +7.0 6967 1.8 ZNF217 SKI TEAD1 CTBP1 FOXA2 TBP SAP130 ESR1 BATF GATA3 ENSG00000287354 piR-56724-002 SERTAD4-AS1 SERTAD4 HHAT RNU5A-8P RF00020-005
GH01J210384 Enhancer 0.6 Ensembl 0.4 -10.6 -10634 1.8 FOS FOXA2 ESR1 JUND GATA3 ZBTB40 RXRA MAX HNF4A REST SERTAD4-AS1 HHAT ENSG00000287157 RF00020-005 RNU5A-8P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RF00020-005 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RF00020-005 Gene

Genomic Locations for RF00020-005 Gene
chr1:210,374,155-210,374,267
(GRCh38/hg38)
Size:
113 bases
Orientation:
Minus strand

Genomic View for RF00020-005 Gene

Genes around RF00020-005 on UCSC Golden Path with GeneCards custom track

RF00020-005 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RF00020-005 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for RF00020-005 Gene

Proteins for RF00020-005 Gene

Post-translational modifications for RF00020-005 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RF00020-005 Gene

Domains & Families for RF00020-005 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RF00020-005 Gene

Function for RF00020-005 Gene

miRNA for RF00020-005 Gene

miRTarBase miRNAs that target RF00020-005

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for RF00020-005 Gene

Localization for RF00020-005 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RF00020-005 Gene

Pathways & Interactions for RF00020-005 Gene

PathCards logo

SuperPathways for RF00020-005 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for RF00020-005 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RF00020-005 Gene

Drugs & Compounds for RF00020-005 Gene

No Compound Related Data Available

Transcripts for RF00020-005 Gene

mRNA/cDNA for RF00020-005 Gene

1 RNACentral transcripts :
1 Rfam transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for RF00020-005 Gene

No ASD Table

Relevant External Links for RF00020-005 Gene

GeneLoc Exon Structure for
RF00020-005

Expression for RF00020-005 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RF00020-005 Gene

Orthologs for RF00020-005 Gene

No data available for Orthologs and Evolution for RF00020-005 Gene

Paralogs for RF00020-005 Gene

No data available for Paralogs for RF00020-005 Gene

Variants for RF00020-005 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for RF00020-005 Gene

Disorders for RF00020-005 Gene

No disorders were found for RF00020-005 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RF00020-005 Gene

Publications for RF00020-005 Gene

No publications were found for RF00020-005 Gene.

No data available for Mastermind for RF00020-005 Gene

Products for RF00020-005 Gene

Sources for RF00020-005 Gene