Aliases for RF00019-085 Gene

Subcategory (RNA class) for RF00019-085 Gene

Y_RNA

Number of RNA Genes sources:

1 / 17

Aliases for RF00019-085 Gene

No data available for External Ids for RF00019-085 Gene

Summaries for RF00019-085 Gene

GeneCards Summary for RF00019-085 Gene

RF00019-085 is an RNA Gene, and is affiliated with the Y_RNA class.

Rfam classification for RF00019-085 Gene

Additional gene information for RF00019-085 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RF00019-085 Gene

Genomics for RF00019-085 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RF00019-085 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J169005 Enhancer 0.2 Ensembl 600.7 -0.1 -148 0.2 RF00019-085 RNY4P17 lnc-SH3RF1-2 CBR4 piR-51005 DDX60L
GH04J168999 Enhancer 0.5 Ensembl 0.7 -4.9 -4948 1 CREB1 YY1 GABPA HNF4A RXRA ZNF652 SP1 ENSG00000251171 CBR4 RF00019-085 RNY4P17 lnc-SH3RF1-2 piR-51005 DDX60L
GH04J168993 Enhancer 0.6 Ensembl ENCODE 0.4 -12.1 -12099 2.7 ZNF316 CEBPG MAFK CEBPB JUND EMSY ENSG00000251171 RF00019-085 RNY4P17 lnc-SH3RF1-2 CBR4 piR-51005 DDX60L
GH04J168995 Enhancer 0.4 Ensembl 0.4 -9.3 -9349 0.2 CTCF RAD21 ZNF654 ENSG00000251171 RNY4P17 RF00019-085 CBR4 lnc-SH3RF1-2 piR-51005 DDX60L
GH04J168978 Enhancer 0.4 Ensembl 0.3 -26.6 -26649 0.8 NFIC NFIB NFIA LCORL piR-51005 CBR4 RNY4P17 lnc-SH3RF1-2 RF00019-085 DDX60L
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RF00019-085 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RF00019-085 Gene

Genomic Locations for RF00019-085 Gene
chr4:169,005,249-169,005,344
(GRCh38/hg38)
Size:
96 bases
Orientation:
Plus strand

Genomic View for RF00019-085 Gene

Genes around RF00019-085 on UCSC Golden Path with GeneCards custom track
RF00019-085 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

RF00019-085 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RF00019-085 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for RF00019-085 Gene

Proteins for RF00019-085 Gene

Post-translational modifications for RF00019-085 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RF00019-085 Gene

Domains & Families for RF00019-085 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RF00019-085 Gene

Function for RF00019-085 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RF00019-085 Gene

Localization for RF00019-085 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RF00019-085 Gene

Pathways & Interactions for RF00019-085 Gene

PathCards logo

SuperPathways for RF00019-085 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RF00019-085 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RF00019-085 Gene

Drugs & Compounds for RF00019-085 Gene

No Compound Related Data Available

Transcripts for RF00019-085 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for RF00019-085 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000065D78F_9606 Y_RNA 96 1

Rfam: RF00019,

RF00019-085 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for RF00019-085 Gene

No ASD Table

Relevant External Links for RF00019-085 Gene

GeneLoc Exon Structure for
RF00019-085

No data available for mRNA/cDNA for RF00019-085 Gene

Expression for RF00019-085 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RF00019-085 Gene

Orthologs for RF00019-085 Gene

No data available for Orthologs and Evolution for RF00019-085 Gene

Paralogs for RF00019-085 Gene

No data available for Paralogs for RF00019-085 Gene

Variants for RF00019-085 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for RF00019-085 Gene

Disorders for RF00019-085 Gene

No disorders were found for RF00019-085 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RF00019-085 Gene

Publications for RF00019-085 Gene

No publications were found for RF00019-085 Gene.

No data available for Mastermind for RF00019-085 Gene

Products for RF00019-085 Gene

Sources for RF00019-085 Gene