RF00017-8212 Gene (RNA Gene)

 

GC0XM020089
GIFtS:
2
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Aliases for RF00017-8212 Gene

Subcategory (RNA class) for RF00017-8212 Gene

SRP_RNA

Number of RNA Genes sources:

1 / 17

Aliases for RF00017-8212 Gene

Previous GeneCards Identifiers for RF00017-8212 Gene

  • GC0XM020170
  • GC0XM020171

No data available for External Ids for RF00017-8212 Gene

Summaries for RF00017-8212 Gene

GeneCards Summary for RF00017-8212 Gene

RF00017-8212 is an RNA Gene, and is affiliated with the SRP_RNA class.

Additional gene information for RF00017-8212 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RF00017-8212 Gene

Genomics for RF00017-8212 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for RF00017-8212 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH0XJ020144 Enhancer 0.3 ENCODE 600.7 +1.7 1696 0.2 JUND JUN RF00017-8212 MAP7D2 EIF1AX lnc-PDHA1-3 RPS6KA3
GH0XJ020139 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 0.4 +5.0 5014 4.8 SP1 CREB1 PRDM10 ZNF629 SOX13 POLR2A BACH1 JUND ZNF143 RBFOX2 EIF1AX EIF1AX-AS1 lnc-PDHA1-3 BCLAF3 RF00017-8212 MAP7D2
GH0XJ020116 Promoter 1.2 EPDnew Ensembl 0.3 +29.8 29794 1.6 HNRNPL KDM1A ZNF7 RBFOX2 ZBTB20 ZBTB26 TFDP1 GABPB1 ATF4 DMAP1 MAP7D2 BCLAF3 RF00017-8213 RF00017-8212
GH0XJ020130 Promoter 0.6 EPDnew 0.4 +15.9 15860 0.1 CEBPB ZNF513 ATF3 MAP7D2 BCLAF3 ENSG00000201882 EIF1AX RF00017-8212
GH0XJ020133 Promoter/Enhancer 0.5 EPDnew Ensembl 0.4 +12.5 12466 0.3 MAP7D2 ENSG00000201882 EIF1AX RF00017-8212
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RF00017-8212 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RF00017-8212 Gene

Genomic Locations for RF00017-8212 Gene
chrX:20,088,965-20,146,394
(GRCh38/hg38)
Size:
57,430 bases
Orientation:
Minus strand

Genomic View for RF00017-8212 Gene

Genes around RF00017-8212 on UCSC Golden Path with GeneCards custom track
RF00017-8212 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

RF00017-8212 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RF00017-8212 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for RF00017-8212 Gene

Proteins for RF00017-8212 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for RF00017-8212 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RF00017-8212 Gene

Domains & Families for RF00017-8212 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RF00017-8212 Gene

Function for RF00017-8212 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RF00017-8212 Gene

Localization for RF00017-8212 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RF00017-8212 Gene

Pathways & Interactions for RF00017-8212 Gene

PathCards logo

SuperPathways for RF00017-8212 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RF00017-8212 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RF00017-8212 Gene

Drugs & Compounds for RF00017-8212 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for RF00017-8212 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for RF00017-8212 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000099DB47_9606 SRP_RNA 117 1

Rfam: RF00017,

RF00017-8212 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for RF00017-8212 Gene

No ASD Table

Relevant External Links for RF00017-8212 Gene

GeneLoc Exon Structure for
RF00017-8212

No data available for mRNA/cDNA for RF00017-8212 Gene

Expression for RF00017-8212 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RF00017-8212 Gene

Orthologs for RF00017-8212 Gene

No data available for Orthologs and Evolution for RF00017-8212 Gene

Paralogs for RF00017-8212 Gene

No data available for Paralogs for RF00017-8212 Gene

Variants for RF00017-8212 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for RF00017-8212 Gene

Disorders for RF00017-8212 Gene

No disorders were found for RF00017-8212 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RF00017-8212 Gene

Publications for RF00017-8212 Gene

No publications were found for RF00017-8212 Gene.

No data available for Mastermind for RF00017-8212 Gene

Products for RF00017-8212 Gene

Sources for RF00017-8212 Gene