Aliases for RF00017-599 Gene

Data sources for RF00017-599 Gene:

Subcategory (RNA class) for RF00017-599 Gene

SRP_RNA

Aliases for RF00017-599 Gene

No data available for External Ids for RF00017-599 Gene

Summaries for RF00017-599 Gene

GeneCards Summary for RF00017-599 Gene

RF00017-599 is an RNA Gene, and is affiliated with the SRP_RNA class.

Additional gene information for RF00017-599 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RF00017-599 Gene

Genomics for RF00017-599 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RF00017-599 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J014596 Enhancer 0.6 Ensembl dbSUPER 250.7 -1.7 -1703 0.2 POLR2A NFATC1 SMAD5 RF00017-599 CDNF HSPA14 lnc-FRMD4A-5 FRMD4A FAM107B
GH10J014599 Enhancer 0.5 ENCODE dbSUPER 250.7 +1.6 1633 0.2 POLR2A KDM1A HSALNG0076315 RF00017-599 CDNF HSPA14 FRMD4A FAM107B
GH10J014582 Promoter/Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -11.2 -11236 8 ETS1 POLR2A FOXA2 TRIM22 IRF4 SMAD4 SAP130 RXRA ETV4 EBF1 HSPA14 CDNF FAM107B RF00017-599 lnc-FRMD4A-5 FRMD4A
GH10J014593 Enhancer 0.7 Ensembl dbSUPER 0.7 -3.0 -3003 0.8 RXRA BCL6 CREM KDM1A HNF4A HNF1A POLR2A ZSCAN5C SP1 CHD4 CDNF HSPA14 RF00017-599 lnc-FRMD4A-5 FRMD4A FAM107B
GH10J014577 Promoter/Enhancer 1.3 Ensembl ENCODE dbSUPER 0.4 -18.3 -18339 4.8 FEZF1 CEBPA CEBPB SAP130 EP300 RXRA ETV4 TEAD3 FOXA2 ZBTB33 ENSG00000236495 FAM107B OR7E115P lnc-FRMD4A-5 RF00017-599 FRMD4A
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RF00017-599 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RF00017-599 Gene

Latest Assembly
chr10:14,597,804-14,597,951
(GRCh38/hg38)
Size:
148 bases
Orientation:
Plus strand

Genomic View for RF00017-599 Gene

Genes around RF00017-599 on UCSC Golden Path with GeneCards custom track
RF00017-599 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

RF00017-599 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RF00017-599 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for RF00017-599 Gene

Proteins for RF00017-599 Gene

Post-translational modifications for RF00017-599 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RF00017-599 Gene

Domains & Families for RF00017-599 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RF00017-599 Gene

Function for RF00017-599 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RF00017-599 Gene

Localization for RF00017-599 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RF00017-599 Gene

Pathways & Interactions for RF00017-599 Gene

PathCards logo

SuperPathways for RF00017-599 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RF00017-599 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RF00017-599 Gene

Drugs & Compounds for RF00017-599 Gene

No Compound Related Data Available

Transcripts for RF00017-599 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for RF00017-599 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000925F29_9606 SRP_RNA 148 1

Rfam: RF00017,

RF00017-599 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for RF00017-599 Gene

No ASD Table

Relevant External Links for RF00017-599 Gene

GeneLoc Exon Structure for
RF00017-599

No data available for mRNA/cDNA for RF00017-599 Gene

Expression for RF00017-599 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RF00017-599 Gene

Orthologs for RF00017-599 Gene

No data available for Orthologs and Evolution for RF00017-599 Gene

Paralogs for RF00017-599 Gene

No data available for Paralogs for RF00017-599 Gene

Variants for RF00017-599 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for RF00017-599 Gene

Disorders for RF00017-599 Gene

No disorders were found for RF00017-599 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RF00017-599 Gene

Publications for RF00017-599 Gene

No publications were found for RF00017-599 Gene.

No data available for Mastermind for RF00017-599 Gene

Products for RF00017-599 Gene

Sources for RF00017-599 Gene