Aliases for RF00017-5808 Gene

Subcategory (RNA class) for RF00017-5808 Gene

SRP_RNA

Number of RNA Genes sources:

1 / 17

Aliases for RF00017-5808 Gene

Previous GeneCards Identifiers for RF00017-5808 Gene

  • GC06M138629

No data available for External Ids for RF00017-5808 Gene

Summaries for RF00017-5808 Gene

GeneCards Summary for RF00017-5808 Gene

RF00017-5808 is an RNA Gene, and is affiliated with the SRP_RNA class.

Additional gene information for RF00017-5808 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RF00017-5808 Gene

Genomics for RF00017-5808 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RF00017-5808 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J138569 Promoter/Enhancer 2.2 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.7 +4.7 4690 4.8 GATAD2A PRDM10 ZNF629 REST TFE3 SOX13 NFKBIZ ZNF7 FOXA1 PRDM1 NHSL1 PBOV1 RF00017-5808 RF00017-5809 lnc-NHSL1-4 HEBP2
GH06J138535 Promoter/Enhancer 1.8 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 -24.4 -24393 12.8 GATAD2A REST TFE3 SOX13 NFKBIZ RCOR2 RELA ZIC2 RBFOX2 RXRB NHSL1 ENSG00000225177 PERP HEBP2 PBOV1 piR-31937-222 RF00017-5808
GH06J138553 Enhancer 1.4 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 -9.6 -9617 11 GATAD2A TEAD4 TFE3 NFKBIZ RCOR2 ZNF7 PRDM1 RXRB TCF12 IRF2 NHSL1 ENSG00000225177 PERP RF00017-5808 piR-31937-222 HEBP2
GH06J138549 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 -15.9 -15874 1.3 GATAD2A REST TFE3 SOX13 NFKBIZ RCOR2 RXRB IRF2 SP1 CEBPA NHSL1 ENSG00000225177 piR-31937-222 RF00017-5808 HEBP2
GH06J138563 Enhancer 0.7 Ensembl ENCODE 0.7 -2.0 -2016 1 TCF7 USF1 RBM22 FOS KDM1A PPARG ZNF644 NHSL1 RF00017-5808 piR-31937-222 HEBP2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RF00017-5808 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RF00017-5808 Gene

Genomic Locations for RF00017-5808 Gene
chr6:138,566,117-138,566,233
(GRCh38/hg38)
Size:
117 bases
Orientation:
Plus strand

Genomic View for RF00017-5808 Gene

Genes around RF00017-5808 on UCSC Golden Path with GeneCards custom track
RF00017-5808 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

RF00017-5808 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RF00017-5808 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for RF00017-5808 Gene

Proteins for RF00017-5808 Gene

Post-translational modifications for RF00017-5808 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RF00017-5808 Gene

Domains & Families for RF00017-5808 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RF00017-5808 Gene

Function for RF00017-5808 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RF00017-5808 Gene

Localization for RF00017-5808 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RF00017-5808 Gene

Pathways & Interactions for RF00017-5808 Gene

PathCards logo

SuperPathways for RF00017-5808 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RF00017-5808 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RF00017-5808 Gene

Drugs & Compounds for RF00017-5808 Gene

No Compound Related Data Available

Transcripts for RF00017-5808 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for RF00017-5808 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000093B8FA_9606 SRP_RNA 117 1

Rfam: RF00017,

URS00009A4D01_9606 SRP_RNA 117 1

Rfam: RF00017,

RF00017-5808 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for RF00017-5808 Gene

No ASD Table

Relevant External Links for RF00017-5808 Gene

GeneLoc Exon Structure for
RF00017-5808

No data available for mRNA/cDNA for RF00017-5808 Gene

Expression for RF00017-5808 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RF00017-5808 Gene

Orthologs for RF00017-5808 Gene

No data available for Orthologs and Evolution for RF00017-5808 Gene

Paralogs for RF00017-5808 Gene

No data available for Paralogs for RF00017-5808 Gene

Variants for RF00017-5808 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for RF00017-5808 Gene

Disorders for RF00017-5808 Gene

No disorders were found for RF00017-5808 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RF00017-5808 Gene

Publications for RF00017-5808 Gene

No publications were found for RF00017-5808 Gene.

No data available for Mastermind for RF00017-5808 Gene

Products for RF00017-5808 Gene

Sources for RF00017-5808 Gene