Aliases for RF00017-5119 Gene

Subcategory (RNA class) for RF00017-5119 Gene

SRP_RNA

Number of RNA Genes sources:

1 / 14

Aliases for RF00017-5119 Gene

No data available for External Ids for RF00017-5119 Gene

Summaries for RF00017-5119 Gene

GeneCards Summary for RF00017-5119 Gene

RF00017-5119 is an RNA Gene, and is affiliated with the SRP_RNA class.

Additional gene information for RF00017-5119 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RF00017-5119 Gene

Genomics for RF00017-5119 Gene

GeneHancer (GH) Regulatory Elements for RF00017-5119 Gene

Promoters and enhancers for RF00017-5119 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J173962 Promoter/Enhancer 1.5 EPDnew FANTOM5 ENCODE CraniofacialAtlas dbSUPER 500.7 -1.2 -1159 2.4 HNRNPK POLR2A PCBP1 YY1 PHF8 NR3C1 ELF1 CHD1 TAF1 TBP HSALNG0046734 RF00017-5119 C5orf47 CPEB4 NSG2
GH05J173959 Enhancer 0.7 UCNEbase Ensembl 500.7 +1.8 1772 1.5 NFIL3 HLF SPI1 RF00017-5119 NSG2 HSALNG0046732 CPEB4
GH05J173917 Promoter/Enhancer 2 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.3 +42.8 42843 4.8 FOXK2 CTCF TCF12 SIN3A SP1 BCLAF1 JUND PHF8 SIX5 ZNF639 BOD1 C5orf47 NSG2 HSALNG0046732 CPEB4 RF00017-5119
GH05J173953 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 +7.3 7280 4.2 TCF12 NCOR1 FOS TCF7 FOXA1 CUX1 SKI TEAD1 FOXA2 NR2F2 NSG2 RF00017-5119 HSALNG0046732 CPEB4
GH05J173940 Enhancer 1.1 ENCODE dbSUPER 0.4 +17.9 17924 7 EP300 FOXK2 TCF12 TEAD4 KDM6A TCF7 FOXA1 ZBTB25 TGIF2 SKI NSG2 C5orf47 BOD1 ENSG00000253244 LINC01485 RF00017-5119 HSALNG0046732 CPEB4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RF00017-5119 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RF00017-5119 Gene

Genomic Locations for RF00017-5119 Gene
chr5:173,962,290-173,962,406
(GRCh38/hg38)
Size:
117 bases
Orientation:
Minus strand

Genomic View for RF00017-5119 Gene

Genes around RF00017-5119 on UCSC Golden Path with GeneCards custom track

RF00017-5119 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RF00017-5119 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for RF00017-5119 Gene

Proteins for RF00017-5119 Gene

Post-translational modifications for RF00017-5119 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RF00017-5119 Gene

Domains & Families for RF00017-5119 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RF00017-5119 Gene

Function for RF00017-5119 Gene

Phenotypes From GWAS Catalog for RF00017-5119 Gene

miRNA for RF00017-5119 Gene

miRTarBase miRNAs that target RF00017-5119

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for RF00017-5119 Gene

Localization for RF00017-5119 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RF00017-5119 Gene

Pathways & Interactions for RF00017-5119 Gene

PathCards logo

SuperPathways for RF00017-5119 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for RF00017-5119 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RF00017-5119 Gene

Drugs & Compounds for RF00017-5119 Gene

No Compound Related Data Available

Transcripts for RF00017-5119 Gene

mRNA/cDNA for RF00017-5119 Gene

1 RNACentral transcripts :
1 Rfam transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for RF00017-5119 Gene

No ASD Table

Relevant External Links for RF00017-5119 Gene

GeneLoc Exon Structure for
RF00017-5119

Expression for RF00017-5119 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RF00017-5119 Gene

Orthologs for RF00017-5119 Gene

No data available for Orthologs and Evolution for RF00017-5119 Gene

Paralogs for RF00017-5119 Gene

No data available for Paralogs for RF00017-5119 Gene

Variants for RF00017-5119 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for RF00017-5119 Gene

Disorders for RF00017-5119 Gene

No disorders were found for RF00017-5119 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RF00017-5119 Gene

Publications for RF00017-5119 Gene

No publications were found for RF00017-5119 Gene.

No data available for Mastermind for RF00017-5119 Gene

Products for RF00017-5119 Gene

Sources for RF00017-5119 Gene