Aliases for RF00017-5104 Gene

Subcategory (RNA class) for RF00017-5104 Gene

SRP_RNA

Number of RNA Genes sources:

1 / 14

Aliases for RF00017-5104 Gene

No data available for External Ids for RF00017-5104 Gene

Summaries for RF00017-5104 Gene

GeneCards Summary for RF00017-5104 Gene

RF00017-5104 is an RNA Gene, and is affiliated with the SRP_RNA class.

Additional gene information for RF00017-5104 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RF00017-5104 Gene

Genomics for RF00017-5104 Gene

GeneHancer (GH) Regulatory Elements for RF00017-5104 Gene

Promoters and enhancers for RF00017-5104 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J172147 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.7 +3.8 3795 10.6 SIN3A NCOR1 KDM6A ZNF263 REST HES1 MEF2C ZBTB25 RUNX1 RCOR1 STK10 UBTD2 EFCAB9 RF00017-5104 RF00017-5105
GH05J172172 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.3 +32.3 32325 18.1 ZBTB40 ZNF217 CTCF ZSCAN5C SIN3A POLR2G USF1 SP1 FOS TEAD4 STK10 UBTD2 ENSG00000212529 EFCAB9 piR-57134-095 RF00017-5104
GH05J172143 Enhancer 1.1 ENCODE dbSUPER 0.7 -3.8 -3787 3.9 PHB2 ZBTB11 REST HES1 MYC CTBP1 RBM25 MIER1 NCOR1 NFRKB EFCAB9 STK10 RF00017-5104 RF00017-5102
GH05J172132 Enhancer 1 FANTOM5 ENCODE dbSUPER 0.4 -15.3 -15266 2.5 FOS RBM25 EBF1 POLR2A BHLHE40 MYC MAX MAZ USF2 SP1 STK10 EFCAB9 UBTD2 RF00017-5102 RF00017-5104
GH05J172162 Enhancer 1 ENCODE dbSUPER 0.4 +15.2 15189 3.3 ZNF217 POLR2G USF1 NCOR1 ZIC2 ZBTB7A CTBP1 CTCF SIN3A KMT2B EFCAB9 UBTD2 ENSG00000212529 STK10 RF00017-5105 piR-57134-095 RF00017-5104
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RF00017-5104 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RF00017-5104 Gene

Genomic Locations for RF00017-5104 Gene
chr5:172,148,905-172,172,815
(GRCh38/hg38)
Size:
23,911 bases
Orientation:
Plus strand

Genomic View for RF00017-5104 Gene

Genes around RF00017-5104 on UCSC Golden Path with GeneCards custom track

RF00017-5104 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RF00017-5104 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for RF00017-5104 Gene

Proteins for RF00017-5104 Gene

Post-translational modifications for RF00017-5104 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RF00017-5104 Gene

Domains & Families for RF00017-5104 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RF00017-5104 Gene

Function for RF00017-5104 Gene

Phenotypes From GWAS Catalog for RF00017-5104 Gene

miRNA for RF00017-5104 Gene

miRTarBase miRNAs that target RF00017-5104

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for RF00017-5104 Gene

Localization for RF00017-5104 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RF00017-5104 Gene

Pathways & Interactions for RF00017-5104 Gene

PathCards logo

SuperPathways for RF00017-5104 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for RF00017-5104 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RF00017-5104 Gene

Drugs & Compounds for RF00017-5104 Gene

No Compound Related Data Available

Transcripts for RF00017-5104 Gene

mRNA/cDNA for RF00017-5104 Gene

1 RNACentral transcripts :
1 Rfam transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for RF00017-5104 Gene

No ASD Table

Relevant External Links for RF00017-5104 Gene

GeneLoc Exon Structure for
RF00017-5104

Expression for RF00017-5104 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RF00017-5104 Gene

Orthologs for RF00017-5104 Gene

No data available for Orthologs and Evolution for RF00017-5104 Gene

Paralogs for RF00017-5104 Gene

No data available for Paralogs for RF00017-5104 Gene

Variants for RF00017-5104 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for RF00017-5104 Gene

Disorders for RF00017-5104 Gene

No disorders were found for RF00017-5104 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RF00017-5104 Gene

Publications for RF00017-5104 Gene

No publications were found for RF00017-5104 Gene.

No data available for Mastermind for RF00017-5104 Gene

Products for RF00017-5104 Gene

Sources for RF00017-5104 Gene