Aliases for RF00017-2816 Gene

Data sources for RF00017-2816 Gene:

Subcategory (RNA class) for RF00017-2816 Gene

SRP_RNA

Aliases for RF00017-2816 Gene

Previous GeneCards Identifiers for RF00017-2816 Gene

  • GC19P011159

No data available for External Ids for RF00017-2816 Gene

Summaries for RF00017-2816 Gene

GeneCards Summary for RF00017-2816 Gene

RF00017-2816 is an RNA Gene, and is affiliated with the SRP_RNA class.

Additional gene information for RF00017-2816 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RF00017-2816 Gene

Genomics for RF00017-2816 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RF00017-2816 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J011319 Promoter/Enhancer 1.1 Ensembl ENCODE 0.4 -12.1 -12080 1.8 CEBPB MAX KLF7 ZNF341 EBF1 KLF9 SP2 PRDM6 ZNF2 ZBTB33 ENSG00000267174 TSPAN16 SWSAP1 EPOR DOCK6 RGL3 ENSG00000267576 RF00017-2816 CCDC159
GH19J011317 Enhancer 0.6 ENCODE 0.4 -10.4 -10358 0.4 ZNF217 FOXA2 CTBP1 RARA BCL6 SPI1 POLR2A FOXA1 ZNF189 HHEX ENSG00000267174 TSPAN16 SWSAP1 EPOR RGL3 ENSG00000267576 RF00017-2816 CCDC159
GH19J011312 Enhancer 0.5 Ensembl 0.4 -5.8 -5819 2 SPI1 ZNF18 ZNF280D KDM1A ZNF7 ZNF558 ENSG00000267174 DOCK6 ENSG00000267576 RF00017-2816 TSPAN16 CCDC159
GH19J011318 Promoter 0.4 Ensembl 0.4 -9.7 -9719 0.2 ZFP91 ENSG00000267174 ENSG00000267576 RF00017-2816 TSPAN16 CCDC159
GH19J011315 Enhancer 0.4 Ensembl 0.4 -7.9 -7919 1.4 GABPB1 ZBTB33 ZSCAN4 ENSG00000267174 ENSG00000267576 RF00017-2816 TSPAN16 CCDC159
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RF00017-2816 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RF00017-2816 Gene

Latest Assembly
chr19:11,307,435-11,307,582
(GRCh38/hg38)
Size:
148 bases
Orientation:
Minus strand

Genomic View for RF00017-2816 Gene

Genes around RF00017-2816 on UCSC Golden Path with GeneCards custom track
RF00017-2816 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

RF00017-2816 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RF00017-2816 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for RF00017-2816 Gene

Proteins for RF00017-2816 Gene

Post-translational modifications for RF00017-2816 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RF00017-2816 Gene

Domains & Families for RF00017-2816 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RF00017-2816 Gene

Function for RF00017-2816 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RF00017-2816 Gene

Localization for RF00017-2816 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RF00017-2816 Gene

Pathways & Interactions for RF00017-2816 Gene

PathCards logo

SuperPathways for RF00017-2816 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RF00017-2816 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RF00017-2816 Gene

Drugs & Compounds for RF00017-2816 Gene

No Compound Related Data Available

Transcripts for RF00017-2816 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for RF00017-2816 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000099385C_9606 SRP_RNA 148 1

Rfam: RF00017,

RF00017-2816 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for RF00017-2816 Gene

No ASD Table

Relevant External Links for RF00017-2816 Gene

GeneLoc Exon Structure for
RF00017-2816

No data available for mRNA/cDNA for RF00017-2816 Gene

Expression for RF00017-2816 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RF00017-2816 Gene

Orthologs for RF00017-2816 Gene

No data available for Orthologs and Evolution for RF00017-2816 Gene

Paralogs for RF00017-2816 Gene

No data available for Paralogs for RF00017-2816 Gene

Variants for RF00017-2816 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for RF00017-2816 Gene

Disorders for RF00017-2816 Gene

No disorders were found for RF00017-2816 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RF00017-2816 Gene

Publications for RF00017-2816 Gene

No publications were found for RF00017-2816 Gene.

No data available for Mastermind for RF00017-2816 Gene

Products for RF00017-2816 Gene

Sources for RF00017-2816 Gene