Aliases for RF00017-2812 Gene

Data sources for RF00017-2812 Gene:

Subcategory (RNA class) for RF00017-2812 Gene

SRP_RNA

Aliases for RF00017-2812 Gene

Previous GeneCards Identifiers for RF00017-2812 Gene

  • GC19M010931
  • GC19M010937
  • GC19M010889

No data available for External Ids for RF00017-2812 Gene

Summaries for RF00017-2812 Gene

GeneCards Summary for RF00017-2812 Gene

RF00017-2812 is an RNA Gene, and is affiliated with the SRP_RNA class.

Additional gene information for RF00017-2812 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RF00017-2812 Gene

Genomics for RF00017-2812 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RF00017-2812 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J010952 Enhancer 1 Ensembl ENCODE 250.7 -1.1 -1112 2.8 CEBPA ZNF217 CEBPB MAX SMAD4 SAP130 EBF1 CTBP1 RARA TEAD3 RF00017-2812 SMARCA4 SPC24 lnc-YIPF2-4 TIMM29
GH19J010927 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 0.3 +23.7 23704 3.2 TBP SP1 MXD4 CEBPA SIX5 NR2C1 MNT IKZF1 SMAD5 ETS1 TIMM29 SMARCA4 YIPF2 lnc-YIPF2-1 lnc-TMED1-2 ILF3 EIF3G KRI1 PPAN DNMT1
GH19J010949 Enhancer 0.7 Ensembl ENCODE 0.7 +4.7 4694 2 CEBPB ZNF362 ZNF18 ZSCAN4 PRDM10 ZNF335 EP300 SMARCA4 RF00017-2812 HSALNG0123974 TIMM29
GH19J010936 Enhancer 1 ENCODE CraniofacialAtlas 0.4 +15.8 15805 0.8 CTCF ZNF610 SIN3A REST TRIM22 SMAD4 SAP130 SMC3 RAD21 TEAD3 ZNF627 ILF3 ZNF700 SMARCA4 PRKCSH PPAN KRI1 HSALNG0123974 TIMM29 RF00017-2812
GH19J010941 Enhancer 0.9 ENCODE 0.4 +10.1 10117 1.4 ZNF217 CTCF ZIC2 SIN3A REST NFATC3 HCFC1 IRF4 TRIM22 SAP130 SMARCA4 HSALNG0123974 TIMM29 RF00017-2812
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RF00017-2812 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RF00017-2812 Gene

Latest Assembly
chr19:10,926,243-10,952,495
(GRCh38/hg38)
Size:
26,253 bases
Orientation:
Minus strand

Genomic View for RF00017-2812 Gene

Genes around RF00017-2812 on UCSC Golden Path with GeneCards custom track
RF00017-2812 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

RF00017-2812 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RF00017-2812 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for RF00017-2812 Gene

Proteins for RF00017-2812 Gene

Post-translational modifications for RF00017-2812 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RF00017-2812 Gene

Domains & Families for RF00017-2812 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RF00017-2812 Gene

Function for RF00017-2812 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RF00017-2812 Gene

Localization for RF00017-2812 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RF00017-2812 Gene

Pathways & Interactions for RF00017-2812 Gene

PathCards logo

SuperPathways for RF00017-2812 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RF00017-2812 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RF00017-2812 Gene

Drugs & Compounds for RF00017-2812 Gene

No Compound Related Data Available

Transcripts for RF00017-2812 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for RF00017-2812 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000096ECA5_9606 SRP_RNA 148 1

Rfam: RF00017,

RF00017-2812 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for RF00017-2812 Gene

No ASD Table

Relevant External Links for RF00017-2812 Gene

GeneLoc Exon Structure for
RF00017-2812

No data available for mRNA/cDNA for RF00017-2812 Gene

Expression for RF00017-2812 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RF00017-2812 Gene

Orthologs for RF00017-2812 Gene

No data available for Orthologs and Evolution for RF00017-2812 Gene

Paralogs for RF00017-2812 Gene

No data available for Paralogs for RF00017-2812 Gene

Variants for RF00017-2812 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for RF00017-2812 Gene

Disorders for RF00017-2812 Gene

No disorders were found for RF00017-2812 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RF00017-2812 Gene

Publications for RF00017-2812 Gene

No publications were found for RF00017-2812 Gene.

No data available for Mastermind for RF00017-2812 Gene

Products for RF00017-2812 Gene

Sources for RF00017-2812 Gene