Aliases for RF00017-2730 Gene

Subcategory (RNA class) for RF00017-2730 Gene

SRP_RNA

Number of RNA Genes sources:

1 / 17

Aliases for RF00017-2730 Gene

Previous GeneCards Identifiers for RF00017-2730 Gene

  • GC19M002026

No data available for External Ids for RF00017-2730 Gene

Summaries for RF00017-2730 Gene

GeneCards Summary for RF00017-2730 Gene

RF00017-2730 is an RNA Gene, and is affiliated with the SRP_RNA class.

Additional gene information for RF00017-2730 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RF00017-2730 Gene

Genomics for RF00017-2730 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RF00017-2730 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J001788 Promoter 0.7 Ensembl 0.7 +3.6 3581 1.2 HNRNPL KDM1A EZH2 GABPB1 VEZF1 ZBTB33 CTCF ONECUT3 RF00017-2730 piR-54452 ATP8B3
GH19J001790 Enhancer 0.7 ENCODE 0.7 +4.5 4497 0.3 SP1 KDM1A DDX20 PKNOX1 PBX2 KLF9 SP2 FOS USF1 TRIM28 RF00017-2730 piR-54452 ATP8B3 ONECUT3
GH19J001795 Enhancer 1 ENCODE 0.4 +9.7 9665 0.5 HNRNPL CTCF PRDM10 ZNF629 IKZF1 ZNF692 JUND MTA2 ZIC2 ZSCAN4 SF3A2 DAZAP1 PTBP1 TCF3 ENSG00000267317 LOC100288123 TMEM259 CNN2 ATP8B3 piR-54452
GH19J001794 Enhancer 0.5 ENCODE 0.4 +8.2 8227 0.1 PRDM10 ZIC2 MNT ETS1 MEIS2 BACH1 JUND GLIS2 REXO1 RNU6-1223P TCF3 piR-54452 RF00017-2730 ATP8B3 ONECUT3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RF00017-2730 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RF00017-2730 Gene

Genomic Locations for RF00017-2730 Gene
chr19:1,786,420-1,786,567
(GRCh38/hg38)
Size:
148 bases
Orientation:
Plus strand

Genomic View for RF00017-2730 Gene

Genes around RF00017-2730 on UCSC Golden Path with GeneCards custom track
RF00017-2730 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

RF00017-2730 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RF00017-2730 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for RF00017-2730 Gene

Proteins for RF00017-2730 Gene

Post-translational modifications for RF00017-2730 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RF00017-2730 Gene

Domains & Families for RF00017-2730 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RF00017-2730 Gene

Function for RF00017-2730 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RF00017-2730 Gene

Localization for RF00017-2730 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RF00017-2730 Gene

Pathways & Interactions for RF00017-2730 Gene

PathCards logo

SuperPathways for RF00017-2730 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RF00017-2730 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RF00017-2730 Gene

Drugs & Compounds for RF00017-2730 Gene

No Compound Related Data Available

Transcripts for RF00017-2730 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for RF00017-2730 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000956AC7_9606 SRP_RNA 148 1

Rfam: RF00017,

RF00017-2730 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for RF00017-2730 Gene

No ASD Table

Relevant External Links for RF00017-2730 Gene

GeneLoc Exon Structure for
RF00017-2730

No data available for mRNA/cDNA for RF00017-2730 Gene

Expression for RF00017-2730 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RF00017-2730 Gene

Orthologs for RF00017-2730 Gene

No data available for Orthologs and Evolution for RF00017-2730 Gene

Paralogs for RF00017-2730 Gene

No data available for Paralogs for RF00017-2730 Gene

Variants for RF00017-2730 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for RF00017-2730 Gene

Disorders for RF00017-2730 Gene

No disorders were found for RF00017-2730 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RF00017-2730 Gene

Publications for RF00017-2730 Gene

No publications were found for RF00017-2730 Gene.

No data available for Mastermind for RF00017-2730 Gene

Products for RF00017-2730 Gene

Sources for RF00017-2730 Gene