RF00017-2562 Gene (RNA Gene)

 

GC19M014104
GIFtS:
3
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Aliases for RF00017-2562 Gene

Data sources for RF00017-2562 Gene:

RNA type for RF00017-2562 Gene

SRP_RNA

Aliases for RF00017-2562 Gene

Previous GeneCards Identifiers for RF00017-2562 Gene

  • GC17P077093
  • GC17P077100
  • GC17P076795
  • GC17P077105

No data available for External Ids for RF00017-2562 Gene

Summaries for RF00017-2562 Gene

GeneCards Summary for RF00017-2562 Gene

RF00017-2562 is an RNA Gene, and is affiliated with the SRP_RNA class.

Additional gene information for RF00017-2562 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RF00017-2562 Gene

Genomics for RF00017-2562 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for RF00017-2562 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH19J013833 Promoter/Enhancer 2.4 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 +9.7 9715 23.2 BCLAF1 SP1 ZNF207 NCOR1 MYC IKZF1 ZNF600 JUND ZNF580 ZNF592 MIR23AHG lnc-ZSWIM4-1 ZNF333 YJU2B TRMT1 ASF1B MRI1 RFX1 RPS6P25 DCAF15
GH19J013857 Enhancer 0.8 ENCODE 0.7 -4.7 -4678 2.3 IKZF1 ZNF580 CTCF MAX RAD51 RFX5 SMARCA5 USF2 FOSL2 JUND HSALNG0124258 NANOS3 RF00017-2562 ZSWIM4
GH19J013856 Enhancer 0.6 ENCODE 0.7 -2.6 -2552 0.5 BHLHE40 HDAC2 HDAC1 DPF2 ARID1B CREM SMARCE1 RNF2 CTBP1 SOX6 RF00017-2562 NANOS3 HSALNG0124258 ZSWIM4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RF00017-2562 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RF00017-2562 Gene

Latest Assembly
chr19:13,854,134-13,854,281
(GRCh38/hg38)
Size:
148 bases
Orientation:
Minus strand

Genomic View for RF00017-2562 Gene

Genes around RF00017-2562 on UCSC Golden Path with GeneCards custom track
RF00017-2562 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

RF00017-2562 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RF00017-2562 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for RF00017-2562 Gene

Proteins for RF00017-2562 Gene

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  1. Antibodies for research
  2. Protein products for research
  3. Assay products for research

Post-translational modifications for RF00017-2562 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RF00017-2562 Gene

Domains & Families for RF00017-2562 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RF00017-2562 Gene

Function for RF00017-2562 Gene

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  1. Animal Models for research
  2. CRISPR products for research
  3. miRNA products for research
  4. Inhibitory RNAs for research
  5. Clone products for research
  6. Cell Lines for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RF00017-2562 Gene

Localization for RF00017-2562 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RF00017-2562 Gene

Pathways & Interactions for RF00017-2562 Gene

PathCards logo

SuperPathways for RF00017-2562 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RF00017-2562 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RF00017-2562 Gene

Drugs & Compounds for RF00017-2562 Gene

Products:

  1. Drug products for research
No Compound Related Data Available

Transcripts for RF00017-2562 Gene

Products:

  1. CRISPR products for research
  2. miRNA products for research
  3. Inhibitory RNAs for research
  4. Clone products for research

Non-coding RNA (ncRNA) Transcripts from RNAcentral for RF00017-2562 Gene

GeneCaRNA:The Human ncRNA Database 2021 Publication

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00009852EC_9606 SRP_RNA 148 1

Rfam: RF00017,

RF00017-2562 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for RF00017-2562 Gene

No ASD Table

Relevant External Links for RF00017-2562 Gene

GeneLoc Exon Structure for
RF00017-2562

No data available for mRNA/cDNA for RF00017-2562 Gene

Expression for RF00017-2562 Gene

Products:

  1. Primer products for research
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RF00017-2562 Gene

Orthologs for RF00017-2562 Gene

No data available for Orthologs and Evolution for RF00017-2562 Gene

Paralogs for RF00017-2562 Gene

No data available for Paralogs for RF00017-2562 Gene

Variants for RF00017-2562 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for RF00017-2562 Gene

Disorders for RF00017-2562 Gene

No disorders were found for RF00017-2562 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RF00017-2562 Gene

Publications for RF00017-2562 Gene

No publications were found for RF00017-2562 Gene.

No data available for Mastermind for RF00017-2562 Gene

Products for RF00017-2562 Gene

Sources for RF00017-2562 Gene