Aliases for RF00017-2557 Gene

Subcategory (RNA class) for RF00017-2557 Gene

SRP_RNA

Number of RNA Genes sources:

1 / 17

Aliases for RF00017-2557 Gene

Previous GeneCards Identifiers for RF00017-2557 Gene

  • GC17P076379

No data available for External Ids for RF00017-2557 Gene

Summaries for RF00017-2557 Gene

GeneCards Summary for RF00017-2557 Gene

RF00017-2557 is an RNA Gene, and is affiliated with the SRP_RNA class.

Additional gene information for RF00017-2557 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RF00017-2557 Gene

Genomics for RF00017-2557 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RF00017-2557 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J075995 Promoter/Enhancer 1.6 EPDnew Ensembl ENCODE dbSUPER 600.7 +2.0 1984 6 HNRNPL GATAD2A CTCF ATF7 PRDM10 REST TFE3 RCOR2 PRDM1 RELA CDK3 RF00017-2557 ACOX1 TEN1 UNK NUP85 GGA3 SRSF2 NT5C ENSG00000266980
GH17J075994 Enhancer 0.3 dbSUPER 600.7 -1.3 -1332 0.3 ZNF121 RF00017-2557 CDK3 TEN1 TEN1-CDK3 lnc-SRP68-1
GH17J075975 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 -16.0 -16011 10.1 ARHGAP35 SP1 HNRNPL CREB1 GATAD2A ATF7 PRDM10 REST ZNF629 TFE3 CDK3 ACOX1 TEN1 TEN1-CDK3 lnc-EVPL-3 SRSF2 NT5C NUP85 UNK TRIM65
GH17J075992 Enhancer 0.7 Ensembl ENCODE 0.7 -4.1 -4104 1 PKNOX1 RUNX3 BCLAF1 TCF12 BCL11A SPI1 IRF4 EBF1 TARDBP ZNF362 TEN1 CDK3 RF00017-2557 TEN1-CDK3 lnc-SRP68-1
GH17J075993 Enhancer 0.6 Ensembl 0.7 -3.0 -3004 0.4 ATF7 KAT7 ATF3 ZBTB33 ZNF792 ZGPAT ATF2 KLF16 CREB1 RXRA CDK3 RF00017-2557 TEN1 TEN1-CDK3 lnc-SRP68-1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RF00017-2557 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RF00017-2557 Gene

Genomic Locations for RF00017-2557 Gene
chr17:75,996,205-75,996,321
(GRCh38/hg38)
Size:
117 bases
Orientation:
Plus strand

Genomic View for RF00017-2557 Gene

Genes around RF00017-2557 on UCSC Golden Path with GeneCards custom track
RF00017-2557 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

RF00017-2557 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RF00017-2557 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for RF00017-2557 Gene

Proteins for RF00017-2557 Gene

Post-translational modifications for RF00017-2557 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RF00017-2557 Gene

Domains & Families for RF00017-2557 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RF00017-2557 Gene

Function for RF00017-2557 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RF00017-2557 Gene

Localization for RF00017-2557 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RF00017-2557 Gene

Pathways & Interactions for RF00017-2557 Gene

PathCards logo

SuperPathways for RF00017-2557 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RF00017-2557 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RF00017-2557 Gene

Drugs & Compounds for RF00017-2557 Gene

No Compound Related Data Available

Transcripts for RF00017-2557 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for RF00017-2557 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00009810CB_9606 SRP_RNA 117 1

Rfam: RF00017,

RF00017-2557 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for RF00017-2557 Gene

No ASD Table

Relevant External Links for RF00017-2557 Gene

GeneLoc Exon Structure for
RF00017-2557

No data available for mRNA/cDNA for RF00017-2557 Gene

Expression for RF00017-2557 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RF00017-2557 Gene

Orthologs for RF00017-2557 Gene

No data available for Orthologs and Evolution for RF00017-2557 Gene

Paralogs for RF00017-2557 Gene

No data available for Paralogs for RF00017-2557 Gene

Variants for RF00017-2557 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for RF00017-2557 Gene

Disorders for RF00017-2557 Gene

No disorders were found for RF00017-2557 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RF00017-2557 Gene

Publications for RF00017-2557 Gene

No publications were found for RF00017-2557 Gene.

No data available for Mastermind for RF00017-2557 Gene

Products for RF00017-2557 Gene

Sources for RF00017-2557 Gene