Aliases for RF00017-2557 Gene

Data sources for RF00017-2557 Gene:

Subcategory (RNA class) for RF00017-2557 Gene

SRP_RNA

Aliases for RF00017-2557 Gene

Previous GeneCards Identifiers for RF00017-2557 Gene

  • GC17P075997

No data available for External Ids for RF00017-2557 Gene

Summaries for RF00017-2557 Gene

GeneCards Summary for RF00017-2557 Gene

RF00017-2557 is an RNA Gene, and is affiliated with the SRP_RNA class.

Additional gene information for RF00017-2557 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RF00017-2557 Gene

Genomics for RF00017-2557 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RF00017-2557 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J076375 Enhancer 1.6 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 250.7 +1.5 1520 4.7 MXD4 CEBPA BRCA1 ZIC2 KDM6A THAP11 FOXA2 ZNF511 SMAD4 SAP130 SPHK1 HSALNG0118828 RF00017-2557 SRSF2 UNK METTL23 ENSG00000266980 QRICH2 MFSD11 CDK3
GH17J076368 Enhancer 1.3 FANTOM5 ENCODE CraniofacialAtlas dbSUPER 0.4 -5.1 -5101 5.8 CEBPA IKZF1 CTCF ZIC2 REST TAL1 FOSL1 RAD21 MAFK JUND SPHK1 QRICH2 PRPSAP1 RF00017-2557 piR-38717-005
GH17J076361 Enhancer 1 Ensembl ENCODE dbSUPER 0.4 -14.1 -14139 1.6 CEBPA ZIC2 SMAD4 SAP130 MIER3 ETV4 BCL6 TBP DRAP1 CREM PRPSAP1 SPHK1 piR-38717-005 RF00017-2557 QRICH2
GH17J076357 Enhancer 0.8 Ensembl dbSUPER 0.4 -18.7 -18740 0.4 TBP FOXA1 FOXA2 SAP130 ETV4 KMT2B DRAP1 FOXP1 RFX1 ELF3 piR-38717-005 SPHK1 RF00017-2557 PRPSAP1 QRICH2
GH17J076363 Enhancer 0.7 FANTOM5 Ensembl 0.4 -12.7 -12656 0.6 NBN ZNF316 RFX1 DPF2 MLLT1 ZNF24 BCOR TRIM28 EMSY SPHK1 RHBDF2 piR-38717-005 RF00017-2557 PRPSAP1 QRICH2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RF00017-2557 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RF00017-2557 Gene

Latest Assembly
chr17:76,376,140-76,376,287
(GRCh38/hg38)
Size:
148 bases
Orientation:
Plus strand

Genomic View for RF00017-2557 Gene

Genes around RF00017-2557 on UCSC Golden Path with GeneCards custom track
RF00017-2557 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

RF00017-2557 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RF00017-2557 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for RF00017-2557 Gene

Proteins for RF00017-2557 Gene

Post-translational modifications for RF00017-2557 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RF00017-2557 Gene

Domains & Families for RF00017-2557 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RF00017-2557 Gene

Function for RF00017-2557 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RF00017-2557 Gene

Localization for RF00017-2557 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RF00017-2557 Gene

Pathways & Interactions for RF00017-2557 Gene

PathCards logo

SuperPathways for RF00017-2557 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RF00017-2557 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RF00017-2557 Gene

Drugs & Compounds for RF00017-2557 Gene

No Compound Related Data Available

Transcripts for RF00017-2557 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for RF00017-2557 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000952221_9606 SRP_RNA 148 1

Rfam: RF00017,

RF00017-2557 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for RF00017-2557 Gene

No ASD Table

Relevant External Links for RF00017-2557 Gene

GeneLoc Exon Structure for
RF00017-2557

No data available for mRNA/cDNA for RF00017-2557 Gene

Expression for RF00017-2557 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RF00017-2557 Gene

Orthologs for RF00017-2557 Gene

No data available for Orthologs and Evolution for RF00017-2557 Gene

Paralogs for RF00017-2557 Gene

No data available for Paralogs for RF00017-2557 Gene

Variants for RF00017-2557 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for RF00017-2557 Gene

Disorders for RF00017-2557 Gene

No disorders were found for RF00017-2557 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RF00017-2557 Gene

Publications for RF00017-2557 Gene

No publications were found for RF00017-2557 Gene.

No data available for Mastermind for RF00017-2557 Gene

Products for RF00017-2557 Gene

Sources for RF00017-2557 Gene