Aliases for RF00017-1116 Gene

Subcategory (RNA class) for RF00017-1116 Gene

SRP_RNA

Number of RNA Genes sources:

1 / 17

Aliases for RF00017-1116 Gene

No data available for External Ids for RF00017-1116 Gene

Summaries for RF00017-1116 Gene

GeneCards Summary for RF00017-1116 Gene

RF00017-1116 is an RNA Gene, and is affiliated with the SRP_RNA class.

Additional gene information for RF00017-1116 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RF00017-1116 Gene

Genomics for RF00017-1116 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RF00017-1116 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J027247 Enhancer 0.2 dbSUPER 600.7 +1.0 1022 1.6 RF00017-1116 MED21 TM7SF3 STK38L ARNTL2
GH12J027242 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 0.7 +4.7 4735 5 BRCA1 ARHGAP35 CREB1 GATAD2A ATF7 PRDM10 ZNF629 TFE3 KDM1A CTCF STK38L piR-48525 MED21 ENSG00000247903 TM7SF3 C12orf71 RF00017-1116 ARNTL2
GH12J027276 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -28.4 -28365 6.4 RNF2 PRDM10 POLR2A BACH1 STAT3 RELA IKZF2 SP1 EED ZBTB44 STK38L TM7SF3 MED21 ENSG00000247903 L13713-050 RF00017-1116 ARNTL2
GH12J027260 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.4 -11.0 -10965 3.6 PRDM1 JUND RUNX3 ZNF316 ATF3 FOS ZNF623 MAFG MAFK HNF4A STK38L MED21 RF00017-1116 L13713-050 ARNTL2
GH12J027271 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 -22.8 -22834 2.5 RNF2 PRDM10 REST TCF12 IKZF2 SP1 PBX2 PKNOX1 SOX13 ZBTB44 MED21 STK38L ENSG00000247903 L13713-050 RF00017-1116 ARNTL2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RF00017-1116 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RF00017-1116 Gene

Genomic Locations for RF00017-1116 Gene
chr12:27,249,520-27,249,636
(GRCh38/hg38)
Size:
117 bases
Orientation:
Minus strand

Genomic View for RF00017-1116 Gene

Genes around RF00017-1116 on UCSC Golden Path with GeneCards custom track
RF00017-1116 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

RF00017-1116 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RF00017-1116 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for RF00017-1116 Gene

Proteins for RF00017-1116 Gene

Post-translational modifications for RF00017-1116 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RF00017-1116 Gene

Domains & Families for RF00017-1116 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RF00017-1116 Gene

Function for RF00017-1116 Gene

Phenotypes From GWAS Catalog for RF00017-1116 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RF00017-1116 Gene

Localization for RF00017-1116 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RF00017-1116 Gene

Pathways & Interactions for RF00017-1116 Gene

PathCards logo

SuperPathways for RF00017-1116 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RF00017-1116 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RF00017-1116 Gene

Drugs & Compounds for RF00017-1116 Gene

No Compound Related Data Available

Transcripts for RF00017-1116 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for RF00017-1116 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000924419_9606 SRP_RNA 117 1

Rfam: RF00017,

RF00017-1116 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for RF00017-1116 Gene

No ASD Table

Relevant External Links for RF00017-1116 Gene

GeneLoc Exon Structure for
RF00017-1116

No data available for mRNA/cDNA for RF00017-1116 Gene

Expression for RF00017-1116 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RF00017-1116 Gene

Orthologs for RF00017-1116 Gene

No data available for Orthologs and Evolution for RF00017-1116 Gene

Paralogs for RF00017-1116 Gene

No data available for Paralogs for RF00017-1116 Gene

Variants for RF00017-1116 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for RF00017-1116 Gene

Disorders for RF00017-1116 Gene

No disorders were found for RF00017-1116 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RF00017-1116 Gene

Publications for RF00017-1116 Gene

No publications were found for RF00017-1116 Gene.

No data available for Mastermind for RF00017-1116 Gene

Products for RF00017-1116 Gene

Sources for RF00017-1116 Gene