Aliases for RF00017-1033 Gene

Data sources for RF00017-1033 Gene:

Subcategory (RNA class) for RF00017-1033 Gene

SRP_RNA

Aliases for RF00017-1033 Gene

No data available for External Ids for RF00017-1033 Gene

Summaries for RF00017-1033 Gene

GeneCards Summary for RF00017-1033 Gene

RF00017-1033 is an RNA Gene, and is affiliated with the SRP_RNA class.

Additional gene information for RF00017-1033 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RF00017-1033 Gene

Genomics for RF00017-1033 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RF00017-1033 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J114117 Enhancer 0.4 Ensembl dbSUPER 250.7 -1.9 -1883 0.2 TRIM28 RF00017-1033 NNMT MK280144-094 ZBTB16 MN298678-016
GH11J114152 Promoter/Enhancer 2.3 UCNEbase FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.3 +44.6 44639 22.1 ZSCAN16 FEZF1 CEBPA MNT IKZF1 BHLHE40 ZEB1 ELF1 ZIC2 ZNF610 ZBTB16 NNMT TTC12 CLDN25 ENSG00000286463 HSALNG0087292 LOC101928875 MN298678-016 RF00017-1033
GH11J114119 Enhancer 0.8 Ensembl dbSUPER 0.7 +3.2 3217 5.6 SMAD5 RXRA HNF4A TCF12 RAD21 ZMYM3 SP1 MEIS2 YY1 NR2F2 NNMT RF00017-1033 LOC101928875 ZBTB16 MN298678-016
GH11J114114 Enhancer 0.7 Ensembl CraniofacialAtlas dbSUPER 0.7 -3.3 -3283 2.2 TRIM28 NR2F2 NNMT HTR3A RF00017-1033 MK280144-094 ZBTB16 MN298678-016
GH11J114097 Enhancer 1.2 FANTOM5 ENCODE dbSUPER 0.4 -20.0 -19973 2.7 FEZF1 CEBPA THAP11 FOXA2 SMAD4 RXRA MIER3 ZSCAN9 ZBTB33 RARA RBM7 ZBTB16 CLDN25 RF00017-1033 MK280144-094 MN298678-016 NNMT
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RF00017-1033 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RF00017-1033 Gene

Latest Assembly
chr11:114,118,984-114,119,100
(GRCh38/hg38)
Size:
117 bases
Orientation:
Plus strand

Genomic View for RF00017-1033 Gene

Genes around RF00017-1033 on UCSC Golden Path with GeneCards custom track
RF00017-1033 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

RF00017-1033 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RF00017-1033 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for RF00017-1033 Gene

Proteins for RF00017-1033 Gene

Post-translational modifications for RF00017-1033 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RF00017-1033 Gene

Domains & Families for RF00017-1033 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RF00017-1033 Gene

Function for RF00017-1033 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RF00017-1033 Gene

Localization for RF00017-1033 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RF00017-1033 Gene

Pathways & Interactions for RF00017-1033 Gene

PathCards logo

SuperPathways for RF00017-1033 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RF00017-1033 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RF00017-1033 Gene

Drugs & Compounds for RF00017-1033 Gene

No Compound Related Data Available

Transcripts for RF00017-1033 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for RF00017-1033 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000984FD7_9606 SRP_RNA 115 1

Rfam: RF00017,

RF00017-1033 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for RF00017-1033 Gene

No ASD Table

Relevant External Links for RF00017-1033 Gene

GeneLoc Exon Structure for
RF00017-1033

No data available for mRNA/cDNA for RF00017-1033 Gene

Expression for RF00017-1033 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RF00017-1033 Gene

Orthologs for RF00017-1033 Gene

No data available for Orthologs and Evolution for RF00017-1033 Gene

Paralogs for RF00017-1033 Gene

No data available for Paralogs for RF00017-1033 Gene

Variants for RF00017-1033 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for RF00017-1033 Gene

Disorders for RF00017-1033 Gene

No disorders were found for RF00017-1033 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RF00017-1033 Gene

Publications for RF00017-1033 Gene

No publications were found for RF00017-1033 Gene.

No data available for Mastermind for RF00017-1033 Gene

Products for RF00017-1033 Gene

Sources for RF00017-1033 Gene