Aliases for RF00017-088 Gene

Subcategory (RNA class) for RF00017-088 Gene

SRP_RNA

Number of RNA Genes sources:

1 / 17

Aliases for RF00017-088 Gene

No data available for External Ids for RF00017-088 Gene

Summaries for RF00017-088 Gene

GeneCards Summary for RF00017-088 Gene

RF00017-088 is an RNA Gene, and is affiliated with the SRP_RNA class.

Additional gene information for RF00017-088 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RF00017-088 Gene

Genomics for RF00017-088 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RF00017-088 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J018618 Enhancer 0.6 Ensembl 0.7 +4.1 4144 1 NR2C1 ZNF600 SP1 EZH2 FOS NR2C2 JUND FOSL1 FOSL2 STAT1 TAS1R2 RF00017-088 PAX7 ENSG00000225478 lnc-PAX7-1 KLHDC7A
GH01J018598 Enhancer 0.6 Ensembl ENCODE 0.4 +23.5 23479 1.3 KDM1A CTCF GATA3 CHD2 ZMYM3 GATA2 PAX7 ENSG00000225478 lnc-PAX7-1 RF00017-088 KLHDC7A
GH01J018597 Enhancer 0.7 Ensembl 0.3 +25.3 25294 0.7 CTCF ATF7 JUND ZNF24 REST RAD21 TRIM22 CEBPA CEBPB ZNF444 PAX7 AKR7A3 ENSG00000225478 lnc-PAX7-1 RF00017-088 KLHDC7A
GH01J018607 Enhancer 0.5 Ensembl 0.4 +15.2 15244 0.4 ZNF600 SCRT2 ATF2 GATA3 SP7 PAX7 KLHDC7A ENSG00000225478 lnc-PAX7-1 RF00017-088
GH01J018603 Enhancer 0.4 Ensembl 0.4 +19.5 19482 0.7 ZNF512 ZNF24 ZFP91 ADNP PAX7 ENSG00000225478 lnc-PAX7-1 RF00017-088 KLHDC7A
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RF00017-088 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RF00017-088 Gene

Genomic Locations for RF00017-088 Gene
chr1:18,622,698-18,622,845
(GRCh38/hg38)
Size:
148 bases
Orientation:
Minus strand

Genomic View for RF00017-088 Gene

Genes around RF00017-088 on UCSC Golden Path with GeneCards custom track
RF00017-088 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

RF00017-088 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RF00017-088 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for RF00017-088 Gene

Proteins for RF00017-088 Gene

Post-translational modifications for RF00017-088 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RF00017-088 Gene

Domains & Families for RF00017-088 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RF00017-088 Gene

Function for RF00017-088 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RF00017-088 Gene

Localization for RF00017-088 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RF00017-088 Gene

Pathways & Interactions for RF00017-088 Gene

PathCards logo

SuperPathways for RF00017-088 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RF00017-088 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RF00017-088 Gene

Drugs & Compounds for RF00017-088 Gene

No Compound Related Data Available

Transcripts for RF00017-088 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for RF00017-088 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000094A04C_9606 SRP_RNA 148 1

Rfam: RF00017,

RF00017-088 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for RF00017-088 Gene

No ASD Table

Relevant External Links for RF00017-088 Gene

GeneLoc Exon Structure for
RF00017-088

No data available for mRNA/cDNA for RF00017-088 Gene

Expression for RF00017-088 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RF00017-088 Gene

Orthologs for RF00017-088 Gene

No data available for Orthologs and Evolution for RF00017-088 Gene

Paralogs for RF00017-088 Gene

No data available for Paralogs for RF00017-088 Gene

Variants for RF00017-088 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for RF00017-088 Gene

Disorders for RF00017-088 Gene

No disorders were found for RF00017-088 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RF00017-088 Gene

Publications for RF00017-088 Gene

No publications were found for RF00017-088 Gene.

No data available for Mastermind for RF00017-088 Gene

Products for RF00017-088 Gene

Sources for RF00017-088 Gene