Aliases for RF00015-004 Gene

Data sources for RF00015-004 Gene:

RNA type for RF00015-004 Gene

snRNA

Aliases for RF00015-004 Gene

No data available for External Ids for RF00015-004 Gene

Summaries for RF00015-004 Gene

GeneCards Summary for RF00015-004 Gene

RF00015-004 is an RNA Gene, and is affiliated with the snRNA class.

Rfam classification for RF00015-004 Gene

Additional gene information for RF00015-004 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RF00015-004 Gene

Genomics for RF00015-004 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RF00015-004 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J092708 Enhancer 1 Ensembl ENCODE 0.4 -7.8 -7766 0.6 NCOR1 IKZF1 ZNF592 ZNF10 YY1 MAFF NBN ZNF316 NFE2 SKIL DR1 DIPK1A EVI5 RF00015-004 RNU4-59P piR-33432-026 lnc-FAM69A-2 GFI1
GH01J092709 Enhancer 0.8 Ensembl ENCODE 0.4 -10.1 -10108 3.3 FEZF1 HOMEZ SMAD4 SAP130 FOXP1 PRDM6 ZNF318 EHMT2 ZNF384 MEIS2 EVI5 piR-33432-026 RF00015-004 RNU4-59P lnc-FAM69A-2 GFI1
GH01J092705 Enhancer 0.5 Ensembl 0.4 -5.1 -5066 1.6 PRDM6 ZNF664 ATF4 TRIM28 ATF3 DACH1 IKZF1 DIPK1A EVI5 RF00015-004 RNU4-59P piR-33432-026 lnc-FAM69A-2 GFI1
GH01J092691 Enhancer 0.5 Ensembl 0.4 +8.7 8734 0.8 FEZF1 SPI1 BATF JUNB SOX6 DIPK1A RF00015-004 RNU4-59P HSALNG0005212 EVI5 GFI1
GH01J092682 Enhancer 0.5 Ensembl 0.4 +18.7 18733 0.4 BHLHE40 MEIS2 ZNF507 SOX6 PKNOX1 CBFA2T3 RF00015-004 RNU4-59P HSALNG0005212 EVI5 GFI1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RF00015-004 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RF00015-004 Gene

Latest Assembly
chr1:92,700,819-92,700,934
(GRCh38/hg38)
Size:
116 bases
Orientation:
Minus strand

Genomic View for RF00015-004 Gene

Genes around RF00015-004 on UCSC Golden Path with GeneCards custom track
RF00015-004 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

RF00015-004 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RF00015-004 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for RF00015-004 Gene

Proteins for RF00015-004 Gene

Post-translational modifications for RF00015-004 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RF00015-004 Gene

Domains & Families for RF00015-004 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RF00015-004 Gene

Function for RF00015-004 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RF00015-004 Gene

Localization for RF00015-004 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RF00015-004 Gene

Pathways & Interactions for RF00015-004 Gene

PathCards logo

SuperPathways for RF00015-004 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RF00015-004 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RF00015-004 Gene

Drugs & Compounds for RF00015-004 Gene

No Compound Related Data Available

Transcripts for RF00015-004 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for RF00015-004 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000065101D_9606 snRNA 116 1

Rfam: RF00015,

RF00015-004 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for RF00015-004 Gene

No ASD Table

Relevant External Links for RF00015-004 Gene

GeneLoc Exon Structure for
RF00015-004

No data available for mRNA/cDNA for RF00015-004 Gene

Expression for RF00015-004 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RF00015-004 Gene

Orthologs for RF00015-004 Gene

No data available for Orthologs and Evolution for RF00015-004 Gene

Paralogs for RF00015-004 Gene

No data available for Paralogs for RF00015-004 Gene

Variants for RF00015-004 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for RF00015-004 Gene

Disorders for RF00015-004 Gene

No disorders were found for RF00015-004 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RF00015-004 Gene

Publications for RF00015-004 Gene

No publications were found for RF00015-004 Gene.

No data available for Mastermind for RF00015-004 Gene

Products for RF00015-004 Gene

Sources for RF00015-004 Gene