Aliases for RF00005-198 Gene

Subcategory (RNA class) for RF00005-198 Gene

tRNA

Number of RNA Genes sources:

1 / 17

Aliases for RF00005-198 Gene

Previous GeneCards Identifiers for RF00005-198 Gene

  • GC09P092539

No data available for External Ids for RF00005-198 Gene

Summaries for RF00005-198 Gene

GeneCards Summary for RF00005-198 Gene

RF00005-198 is an RNA Gene, and is affiliated with the tRNA class.

Rfam classification for RF00005-198 Gene

Additional gene information for RF00005-198 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RF00005-198 Gene

Genomics for RF00005-198 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RF00005-198 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J084271 Promoter/Enhancer 1.3 FANTOM5 ENCODE CraniofacialAtlas 0.3 +25.1 25141 1.5 RFX1 POLR2A SP1 RFX3 SIN3A RAD21 BMI1 ZBTB40 CBX2 ARNT KIF27 NTRK2 LOC105376116 RF00005-198 RF00017-7667 SLC28A3 ENSG00000233262 HNRNPK
GH09J084260 Enhancer 0.8 ENCODE 0.4 +14.8 14781 0.3 CTCF ZNF692 LARP7 STAT3 ZNF143 PKNOX1 REST RAD21 TRIM22 NRF1 RF00005-198 LOC105376116 RF00017-7667 SLC28A3 ENSG00000233262 HNRNPK
GH09J084253 Enhancer 0.6 Ensembl ENCODE 0.4 +8.6 8565 3.4 CTBP1 ZNF217 DPF2 SMARCE1 MAX GATA2 ENSG00000233262 KIF27 RF00005-198 LOC105376116 RF00017-7667 SLC28A3 HNRNPK
GH09J084265 Enhancer 0.7 Ensembl ENCODE 0.4 +19.7 19683 0.8 RFX1 IKZF2 PKNOX1 EED RELB USF1 IKZF1 BMI1 SIN3A SP1 KIF27 LOC105376116 RF00005-198 RF00017-7667 SLC28A3 ENSG00000233262 HNRNPK
GH09J084228 Enhancer 0.5 Ensembl ENCODE 0.4 -16.7 -16746 3.1 POLR2A SMARCA4 ENSG00000233262 RF00017-7668 RF00005-198 RF00017-7667 SLC28A3 HNRNPK
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RF00005-198 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RF00005-198 Gene

Genomic Locations for RF00005-198 Gene
chr9:84,246,500-84,246,559
(GRCh38/hg38)
Size:
60 bases
Orientation:
Plus strand

Genomic View for RF00005-198 Gene

Genes around RF00005-198 on UCSC Golden Path with GeneCards custom track
RF00005-198 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

RF00005-198 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RF00005-198 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for RF00005-198 Gene

Proteins for RF00005-198 Gene

Post-translational modifications for RF00005-198 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RF00005-198 Gene

Domains & Families for RF00005-198 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RF00005-198 Gene

Function for RF00005-198 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RF00005-198 Gene

Localization for RF00005-198 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RF00005-198 Gene

Pathways & Interactions for RF00005-198 Gene

PathCards logo

SuperPathways for RF00005-198 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RF00005-198 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RF00005-198 Gene

Drugs & Compounds for RF00005-198 Gene

No Compound Related Data Available

Transcripts for RF00005-198 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for RF00005-198 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000071737E_9606 tRNA 60 1

Rfam: RF00005,

RF00005-198 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for RF00005-198 Gene

No ASD Table

Relevant External Links for RF00005-198 Gene

GeneLoc Exon Structure for
RF00005-198

No data available for mRNA/cDNA for RF00005-198 Gene

Expression for RF00005-198 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RF00005-198 Gene

Orthologs for RF00005-198 Gene

No data available for Orthologs and Evolution for RF00005-198 Gene

Paralogs for RF00005-198 Gene

No data available for Paralogs for RF00005-198 Gene

Variants for RF00005-198 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for RF00005-198 Gene

Disorders for RF00005-198 Gene

No disorders were found for RF00005-198 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RF00005-198 Gene

Publications for RF00005-198 Gene

No publications were found for RF00005-198 Gene.

No data available for Mastermind for RF00005-198 Gene

Products for RF00005-198 Gene

Sources for RF00005-198 Gene