RF00005-075 Gene (RNA Gene)

 

GC19M043432
GIFtS:
3
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Aliases for RF00005-075 Gene

Subcategory (RNA class) for RF00005-075 Gene

tRNA

Number of RNA Genes sources:

2 / 17

Aliases for RF00005-075 Gene

Previous GeneCards Identifiers for RF00005-075 Gene

  • GC19M049536
  • GC19M042355

No data available for External Ids for RF00005-075 Gene

Summaries for RF00005-075 Gene

GeneCards Summary for RF00005-075 Gene

RF00005-075 is an RNA Gene, and is affiliated with the tRNA class.

Rfam classification for RF00005-075 Gene

Additional gene information for RF00005-075 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RF00005-075 Gene

Genomics for RF00005-075 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for RF00005-075 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH19J041243 Enhancer 0.2 Ensembl 600.7 -1.5 -1492 0.4 RF00005-075 TRK-TTT10-1 HNRNPUL1 lnc-TGFB1-6 AXL
GH19J041229 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 +11.9 11908 2.4 ZNF300 ZSCAN4 ZNF501 ZNF148 HES1 FOXK2 ZNF248 ZNF157 YBX1 ZNF266 ZNF526 ZNF574 HNRNPUL1 SNRPA ENSG00000269843 CCDC97 NUMBL AKT2 CYP2G1P COQ8B
GH19J041231 Enhancer 0.8 Ensembl dbSUPER 0.4 +8.9 8908 3.2 IKZF1 KDM1A SCRT2 HDAC2 ZNF444 SCRT1 NFXL1 PTBP1 BCOR SPI1 AXL TMEM91 CEACAM21 DMAC2 HNRNPA1P52 RF00005-075 TRK-TTT10-1 lnc-TGFB1-3 HNRNPUL1
GH19J041238 Enhancer 0.3 Ensembl 0.7 +4.2 4208 0.6 POLR2A RF00005-075 TRK-TTT10-1 lnc-TGFB1-3 AXL HNRNPUL1
GH19J041228 Enhancer 0.3 Ensembl 0.4 +13.5 13508 0.8 SIN3A ZNF121 AXL CEACAM21 lnc-TGFB1-3 RF00005-075 TRK-TTT10-1 HNRNPUL1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RF00005-075 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RF00005-075 Gene

Genomic Locations for RF00005-075 Gene
chr19:41,242,237-41,242,309
(GRCh38/hg38)
Size:
73 bases
Orientation:
Minus strand

Genomic View for RF00005-075 Gene

Genes around RF00005-075 on UCSC Golden Path with GeneCards custom track
RF00005-075 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

RF00005-075 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RF00005-075 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for RF00005-075 Gene

Proteins for RF00005-075 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for RF00005-075 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RF00005-075 Gene

Domains & Families for RF00005-075 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RF00005-075 Gene

Function for RF00005-075 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RF00005-075 Gene

Localization for RF00005-075 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RF00005-075 Gene

Pathways & Interactions for RF00005-075 Gene

PathCards logo

SuperPathways for RF00005-075 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RF00005-075 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RF00005-075 Gene

Drugs & Compounds for RF00005-075 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for RF00005-075 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for RF00005-075 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00006BAB7E_9606 tRNA 73 2

Rfam: RF00005,

ENA: HG983942.1:1..73:tRNA,

RF00005-075 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for RF00005-075 Gene

No ASD Table

Relevant External Links for RF00005-075 Gene

GeneLoc Exon Structure for
RF00005-075

No data available for mRNA/cDNA for RF00005-075 Gene

Expression for RF00005-075 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RF00005-075 Gene

Orthologs for RF00005-075 Gene

No data available for Orthologs and Evolution for RF00005-075 Gene

Paralogs for RF00005-075 Gene

No data available for Paralogs for RF00005-075 Gene

Variants for RF00005-075 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for RF00005-075 Gene

Disorders for RF00005-075 Gene

No disorders were found for RF00005-075 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RF00005-075 Gene

Publications for RF00005-075 Gene

No publications were found for RF00005-075 Gene.

No data available for Mastermind for RF00005-075 Gene

Products for RF00005-075 Gene

Sources for RF00005-075 Gene