Aliases for RF00004-088 Gene

Subcategory (RNA class) for RF00004-088 Gene

snRNA

Number of RNA Genes sources:

1 / 17

Aliases for RF00004-088 Gene

No data available for External Ids for RF00004-088 Gene

Summaries for RF00004-088 Gene

GeneCards Summary for RF00004-088 Gene

RF00004-088 is an RNA Gene, and is affiliated with the snRNA class.

Rfam classification for RF00004-088 Gene

Additional gene information for RF00004-088 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RF00004-088 Gene

Genomics for RF00004-088 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RF00004-088 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J075831 Enhancer 0.6 Ensembl ENCODE 0.7 -2.5 -2512 1.4 PRDM10 USF1 SPI1 POLR2A MAX NAAA RF00004-088 RNU2-16P ENSG00000229717 LOC105377284 piR-37097-076 PPEF2 G3BP2
GH04J075843 Enhancer 1 FANTOM5 Ensembl ENCODE 0.4 -15.3 -15289 2.6 GATAD2A CEBPA SOX13 CEBPB SP1 ATF3 FOXA2 NR2F2 FOSL2 CEBPG CXCL10 CXCL9 CXCL11 NAAA piR-37097-076 RNU2-16P RF00004-088 PPEF2 G3BP2
GH04J075848 Enhancer 1 Ensembl ENCODE 0.4 -19.3 -19312 2.2 CEBPG GATAD2A CTCF JUND ZNF143 REST RAD21 TRIM22 GABPA SOX6 ENSG00000229717 PPEF2 FAM47E piR-37097-076 RNU2-16P RF00004-088 G3BP2
GH04J075841 Enhancer 0.8 Ensembl ENCODE 0.4 -12.3 -12312 1.8 RFX1 DPF2 FOXJ2 CEBPA SOX13 SP1 NFE2 ZNF316 FOXA2 MAFF PPEF2 RNU2-16P RF00004-088 piR-37097-076 G3BP2
GH04J075847 Enhancer 0.4 ENCODE 0.4 -18.0 -18034 0.2 ZNF433 ZNF781 ZNF518A ZBTB8A THAP6 ENSG00000229717 PPEF2 RCHY1 SDAD1 piR-37097-076 RNU2-16P RF00004-088 G3BP2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RF00004-088 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RF00004-088 Gene

Genomic Locations for RF00004-088 Gene
chr4:75,829,474-75,829,589
(GRCh38/hg38)
Size:
116 bases
Orientation:
Minus strand

Genomic View for RF00004-088 Gene

Genes around RF00004-088 on UCSC Golden Path with GeneCards custom track
RF00004-088 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

RF00004-088 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RF00004-088 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for RF00004-088 Gene

Proteins for RF00004-088 Gene

Post-translational modifications for RF00004-088 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RF00004-088 Gene

Domains & Families for RF00004-088 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RF00004-088 Gene

Function for RF00004-088 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RF00004-088 Gene

Localization for RF00004-088 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RF00004-088 Gene

Pathways & Interactions for RF00004-088 Gene

PathCards logo

SuperPathways for RF00004-088 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RF00004-088 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RF00004-088 Gene

Drugs & Compounds for RF00004-088 Gene

No Compound Related Data Available

Transcripts for RF00004-088 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for RF00004-088 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00006FE165_9606 snRNA 116 1

Rfam: RF00004,

RF00004-088 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for RF00004-088 Gene

No ASD Table

Relevant External Links for RF00004-088 Gene

GeneLoc Exon Structure for
RF00004-088

No data available for mRNA/cDNA for RF00004-088 Gene

Expression for RF00004-088 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RF00004-088 Gene

Orthologs for RF00004-088 Gene

No data available for Orthologs and Evolution for RF00004-088 Gene

Paralogs for RF00004-088 Gene

No data available for Paralogs for RF00004-088 Gene

Variants for RF00004-088 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for RF00004-088 Gene

Disorders for RF00004-088 Gene

No disorders were found for RF00004-088 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RF00004-088 Gene

Publications for RF00004-088 Gene

No publications were found for RF00004-088 Gene.

No data available for Mastermind for RF00004-088 Gene

Products for RF00004-088 Gene

Sources for RF00004-088 Gene