RF00003-082 Gene (RNA Gene)

 

GC07P021383
GIFtS:
3
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Aliases for RF00003-082 Gene

Data sources for RF00003-082 Gene:

Subcategory (RNA class) for RF00003-082 Gene

snRNA

Aliases for RF00003-082 Gene

Previous GeneCards Identifiers for RF00003-082 Gene

  • GC06P047823
  • GC07M120008

No data available for External Ids for RF00003-082 Gene

Summaries for RF00003-082 Gene

GeneCards Summary for RF00003-082 Gene

RF00003-082 is an RNA Gene, and is affiliated with the snRNA class.

Rfam classification for RF00003-082 Gene

Additional gene information for RF00003-082 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RF00003-082 Gene

Genomics for RF00003-082 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for RF00003-082 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH07J021381 Enhancer 0.2 Ensembl 250.7 +0.3 338 0.6 RF00003-082 RNU1-15P piR-35002-076 HSALNG0056534 SP4 SP8
GH07J021383 Enhancer 0.6 Ensembl ENCODE 0.7 +2.3 2338 2.6 NR2F1 HDGF ATF7 TARDBP DPF2 CEBPG RF00003-082 RNU1-15P piR-35002-076 HSALNG0056534 SP4 SP8
GH07J021364 Enhancer 1.1 Ensembl ENCODE 0.4 -15.3 -15348 3.2 FEZF1 CEBPA CEBPB CUX1 FOXA2 IRF4 SAP130 EP300 ZEB2 TAL1 SP4 RNU1-15P HSALNG0056534 RF00003-082 SP8
GH07J021352 Enhancer 1.1 FANTOM5 ENCODE 0.3 -26.9 -26916 4.9 SP1 BCL11A IRF2 HES1 VEZF1 IRF4 TRIM22 ZEB2 EBF1 SMARCA5 SP4 HSALNG0056534 RF00003-082 RNU1-15P SP8
GH07J021358 Enhancer 0.5 ENCODE 0.3 -22.5 -22515 0.9 CEBPA FOXA2 SPI1 ZNF24 BCL6B CEBPB FOXA3 SP4 HSALNG0056534 RF00003-082 RNU1-15P SP8
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RF00003-082 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RF00003-082 Gene

Latest Assembly
chr7:21,381,363-21,381,506
(GRCh38/hg38)
Size:
144 bases
Orientation:
Plus strand

Genomic View for RF00003-082 Gene

Genes around RF00003-082 on UCSC Golden Path with GeneCards custom track
RF00003-082 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

RF00003-082 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RF00003-082 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for RF00003-082 Gene

Proteins for RF00003-082 Gene

Products:

  1. Antibodies for research
  2. Protein products for research
  3. Assay products for research

Post-translational modifications for RF00003-082 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RF00003-082 Gene

Domains & Families for RF00003-082 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RF00003-082 Gene

Function for RF00003-082 Gene

Products:

  1. Animal Models for research
  2. CRISPR products for research
  3. miRNA products for research
  4. Inhibitory RNAs for research
  5. Clone products for research
  6. Cell Lines for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RF00003-082 Gene

Localization for RF00003-082 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RF00003-082 Gene

Pathways & Interactions for RF00003-082 Gene

PathCards logo

SuperPathways for RF00003-082 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RF00003-082 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RF00003-082 Gene

Drugs & Compounds for RF00003-082 Gene

Products:

  1. Drug products for research
No Compound Related Data Available

Transcripts for RF00003-082 Gene

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  1. CRISPR products for research
  2. miRNA products for research
  3. Inhibitory RNAs for research
  4. Clone products for research

Non-coding RNA (ncRNA) Transcripts from RNAcentral for RF00003-082 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000677C7A_9606 snRNA 144 1

Rfam: RF00003,

URS00005F9F3A_9606 snRNA 134 1

ENA: AC005094.1:129908..130041:ncRNA,

URS00002A520B_9606 snRNA 132 1

ENA: M25191.1:475..606:ncRNA,

RF00003-082 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for RF00003-082 Gene

No ASD Table

Relevant External Links for RF00003-082 Gene

GeneLoc Exon Structure for
RF00003-082

No data available for mRNA/cDNA for RF00003-082 Gene

Expression for RF00003-082 Gene

Products:

  1. Primer products for research
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RF00003-082 Gene

Orthologs for RF00003-082 Gene

No data available for Orthologs and Evolution for RF00003-082 Gene

Paralogs for RF00003-082 Gene

No data available for Paralogs for RF00003-082 Gene

Variants for RF00003-082 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for RF00003-082 Gene

Disorders for RF00003-082 Gene

No disorders were found for RF00003-082 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RF00003-082 Gene

Publications for RF00003-082 Gene

No publications were found for RF00003-082 Gene.

No data available for Mastermind for RF00003-082 Gene

Products for RF00003-082 Gene

Sources for RF00003-082 Gene