RF00003-043 Gene (RNA Gene)

 

GC17P077921
GIFtS:
2

Aliases for RF00003-043 Gene

Subcategory (RNA class) for RF00003-043 Gene

snRNA

Quality Score for this RNA gene is

11

Aliases for RF00003-043 Gene

No data available for External Ids for RF00003-043 Gene

Summaries for RF00003-043 Gene

GeneCards Summary for RF00003-043 Gene

RF00003-043 is an RNA Gene, and is affiliated with the snRNA class.

Rfam classification for RF00003-043 Gene

Additional gene information for RF00003-043 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RF00003-043 Gene

Genomics for RF00003-043 Gene

GeneHancer (GH) Regulatory Elements for RF00003-043 Gene

Promoters and enhancers for RF00003-043 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH17J077919 Enhancer 0.2 Ensembl 750.6 -0.7 -670 0.3 RF00003-043 RNU1-80P LINC01973
GH17J077924 Enhancer 0.6 ENCODE 0.6 +4.8 4847 0.8 ZNF121 POU5F1 SP1 SP7 ZIC2 PRDM10 POLR2A CREM ZNF18 WT1 LOC105371909 LINC01973 TNRC6C RF00003-043 RNU1-80P
GH17J077916 Enhancer 0.5 ENCODE 0.6 -3.1 -3144 0.2 IKZF1 IKZF2 PKNOX1 EED DPF2 CTCF IRF4 EBF1 POLR2A RF00003-043 RNU1-80P LINC01973
GH17J077914 Enhancer 0.8 Ensembl ENCODE 0.4 -5.5 -5509 0.8 CTCF RAD21 ZSCAN21 GLIS2 ZIC2 ZBTB8A PRDM10 PATZ1 ZBTB17 ZNF366 LINC01973 RF00003-043 RNU1-80P
GH17J077923 Enhancer 0.3 ENCODE 0.6 +3.8 3826 0.1 GLIS1 LINC01973 TNRC6C LOC105371909 RF00003-043 RNU1-80P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RF00003-043 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RF00003-043 Gene

Genomic Locations for RF00003-043 Gene
chr17:77,920,098-77,920,258
(GRCh38/hg38)
Size:
161 bases
Orientation:
Plus strand

Genomic View for RF00003-043 Gene

Genes around RF00003-043 on UCSC Golden Path with GeneCards custom track

RF00003-043 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RF00003-043 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for RF00003-043 Gene

Proteins for RF00003-043 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for RF00003-043 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RF00003-043 Gene

Domains & Families for RF00003-043 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RF00003-043 Gene

Function for RF00003-043 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for RF00003-043 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RF00003-043 Gene

Localization for RF00003-043 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RF00003-043 Gene

Pathways & Interactions for RF00003-043 Gene

PathCards logo

SuperPathways for RF00003-043 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RF00003-043 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RF00003-043 Gene

Drugs & Compounds for RF00003-043 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for RF00003-043 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for RF00003-043 Gene

(1) RNACentral transcripts :
(1) Rfam transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for RF00003-043 Gene

No ASD Table

Relevant External Links for RF00003-043 Gene

GeneLoc Exon Structure for
RF00003-043

Expression for RF00003-043 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RF00003-043 Gene

Orthologs for RF00003-043 Gene

No data available for Orthologs and Evolution for RF00003-043 Gene

Paralogs for RF00003-043 Gene

No data available for Paralogs for RF00003-043 Gene

Variants for RF00003-043 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for RF00003-043 Gene

Disorders for RF00003-043 Gene

No disorders were found for RF00003-043 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RF00003-043 Gene

Publications for RF00003-043 Gene

No publications were found for RF00003-043 Gene.

No data available for External Links for RF00003-043 Gene

Products for RF00003-043 Gene

Sources for RF00003-043 Gene