RF00003-043 Gene (RNA Gene)

 

GC02M085735
GIFtS:
3
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Aliases for RF00003-043 Gene

Subcategory (RNA class) for RF00003-043 Gene

snRNA

Number of RNA Genes sources:

1 / 17

Aliases for RF00003-043 Gene

Previous GeneCards Identifiers for RF00003-043 Gene

  • GC17P077921
  • GC02P231135

No data available for External Ids for RF00003-043 Gene

Summaries for RF00003-043 Gene

GeneCards Summary for RF00003-043 Gene

RF00003-043 is an RNA Gene, and is affiliated with the snRNA class.

Rfam classification for RF00003-043 Gene

Additional gene information for RF00003-043 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RF00003-043 Gene

Genomics for RF00003-043 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for RF00003-043 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH02J085729 Promoter/Enhancer 1.8 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 -0.9 -943 1 CREB1 GATAD2A CTCF TFE3 ZNF143 RELA RXRB REST RAD21 IRF2 RF00003-043 RNU1-38P SH2D6 lnc-SFTPB-1 ATOH8 GNLY
GH02J085728 Enhancer 0.6 FANTOM5 dbSUPER 600.7 -0.2 -184 0.4 CTCF NR2F1 RF00003-043 RNU1-38P ATOH8 SH2D6 lnc-SFTPB-1 GNLY
GH02J085723 Enhancer 0.9 Ensembl CraniofacialAtlas dbSUPER 0.7 +3.5 3536 3.6 SP1 CEBPA SCRT2 CEBPB YY1 JUND RAD21 HNF4A RXRA MAX ATOH8 SFTPB ENSG00000229498 CAPG RF00003-043 RNU1-38P lnc-GNLY-1 GNLY
GH02J085731 Enhancer 0.8 Ensembl ENCODE dbSUPER 0.7 -2.9 -2912 1.5 CREB1 ESRRA EBF1 FOS IKZF1 NFE2L2 CAPG ATOH8 RF00003-043 RNU1-38P lnc-SFTPB-1 GNLY
GH02J085709 Promoter/Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +16.6 16597 4.4 CREB1 REST PKNOX1 SP1 GTF2F1 RFX1 HMBOX1 FOXA2 NR3C1 ATF3 lnc-GNLY-1 GNLY ATOH8 GPR160P1 SFTPB ENSG00000229498 RNU1-38P RF00003-043
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RF00003-043 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RF00003-043 Gene

Genomic Locations for RF00003-043 Gene
chr2:85,728,194-85,728,337
(GRCh38/hg38)
Size:
144 bases
Orientation:
Minus strand

Genomic View for RF00003-043 Gene

Genes around RF00003-043 on UCSC Golden Path with GeneCards custom track
RF00003-043 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

RF00003-043 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RF00003-043 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for RF00003-043 Gene

Proteins for RF00003-043 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for RF00003-043 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RF00003-043 Gene

Domains & Families for RF00003-043 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RF00003-043 Gene

Function for RF00003-043 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RF00003-043 Gene

Localization for RF00003-043 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RF00003-043 Gene

Pathways & Interactions for RF00003-043 Gene

PathCards logo

SuperPathways for RF00003-043 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RF00003-043 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RF00003-043 Gene

Drugs & Compounds for RF00003-043 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for RF00003-043 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for RF00003-043 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000065DE05_9606 snRNA 144 1

Rfam: RF00003,

RF00003-043 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for RF00003-043 Gene

No ASD Table

Relevant External Links for RF00003-043 Gene

GeneLoc Exon Structure for
RF00003-043

No data available for mRNA/cDNA for RF00003-043 Gene

Expression for RF00003-043 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RF00003-043 Gene

Orthologs for RF00003-043 Gene

No data available for Orthologs and Evolution for RF00003-043 Gene

Paralogs for RF00003-043 Gene

No data available for Paralogs for RF00003-043 Gene

Variants for RF00003-043 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for RF00003-043 Gene

Disorders for RF00003-043 Gene

No disorders were found for RF00003-043 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RF00003-043 Gene

Publications for RF00003-043 Gene

No publications were found for RF00003-043 Gene.

No data available for Mastermind for RF00003-043 Gene

Products for RF00003-043 Gene

Sources for RF00003-043 Gene