Aliases for RF00003-039 Gene

Subcategory (RNA class) for RF00003-039 Gene

snRNA

Quality Score for this RNA gene is

11

Aliases for RF00003-039 Gene

No data available for External Ids for RF00003-039 Gene

Summaries for RF00003-039 Gene

GeneCards Summary for RF00003-039 Gene

RF00003-039 is an RNA Gene, and is affiliated with the snRNA class.

Rfam classification for RF00003-039 Gene

Additional gene information for RF00003-039 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RF00003-039 Gene

Genomics for RF00003-039 Gene

GeneHancer (GH) Regulatory Elements for RF00003-039 Gene

Promoters and enhancers for RF00003-039 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J058659 Promoter/Enhancer 2.4 EPDnew FANTOM5 ENCODE CraniofacialAtlas dbSUPER 750.6 +0.2 156 1.7 FOXK2 SIN3A ZNF24 ZBTB40 SP1 SIX5 ZBTB6 LCORL FOXA1 MLX TEX14 RF00003-039 SRSF1 MKS1 DHX40 SMG8 TRIM37 RAD51C ENSG00000224738 SKA2
GH17J058658 Enhancer 0.5 ENCODE 750.6 +1.2 1170 0.2 MAFK ZNF692 ZNF316 ZSCAN5C SCRT1 MAFG ZFP69B KDM1A EMSY RF00003-039 LOC105371842 TEX14
GH17J058642 Enhancer 0.7 Ensembl ENCODE 0.4 +16.6 16604 2.2 ZNF121 BCL6B FOS JUN JUND ZNF664 IKZF1 TRIM37 TEX14 LOC105371842 RF00003-039
GH17J058640 Enhancer 0.5 ENCODE 0.4 +18.8 18830 0.2 SP1 JUND FOXA2 HNF4A RXRA LOC105371842 RF00003-039 TEX14
GH17J058639 Enhancer 0.3 ENCODE 0.4 +19.4 19390 0.2 CREB1 JUND TRIM37 LOC105371842 RF00003-039 TEX14
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RF00003-039 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RF00003-039 Gene

Genomic Locations for RF00003-039 Gene
chr17:58,659,149-58,659,305
(GRCh38/hg38)
Size:
157 bases
Orientation:
Minus strand

Genomic View for RF00003-039 Gene

Genes around RF00003-039 on UCSC Golden Path with GeneCards custom track

RF00003-039 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RF00003-039 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for RF00003-039 Gene

Proteins for RF00003-039 Gene

Post-translational modifications for RF00003-039 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RF00003-039 Gene

Domains & Families for RF00003-039 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RF00003-039 Gene

Function for RF00003-039 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RF00003-039 Gene

Localization for RF00003-039 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RF00003-039 Gene

Pathways & Interactions for RF00003-039 Gene

PathCards logo

SuperPathways for RF00003-039 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RF00003-039 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RF00003-039 Gene

Drugs & Compounds for RF00003-039 Gene

No Compound Related Data Available

Transcripts for RF00003-039 Gene

mRNA/cDNA for RF00003-039 Gene

(1) RNACentral transcripts :
(1) Rfam transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for RF00003-039 Gene

No ASD Table

Relevant External Links for RF00003-039 Gene

GeneLoc Exon Structure for
RF00003-039

Expression for RF00003-039 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RF00003-039 Gene

Orthologs for RF00003-039 Gene

No data available for Orthologs and Evolution for RF00003-039 Gene

Paralogs for RF00003-039 Gene

No data available for Paralogs for RF00003-039 Gene

Variants for RF00003-039 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for RF00003-039 Gene

Disorders for RF00003-039 Gene

No disorders were found for RF00003-039 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RF00003-039 Gene

Publications for RF00003-039 Gene

No publications were found for RF00003-039 Gene.

No data available for External Links for RF00003-039 Gene

Products for RF00003-039 Gene

Sources for RF00003-039 Gene