RF00001-320 Gene (RNA Gene)

 

GC08P017749
GIFtS:
3
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Aliases for RF00001-320 Gene

Data sources for RF00001-320 Gene:

Subcategory (RNA class) for RF00001-320 Gene

rRNA

Aliases for RF00001-320 Gene

No data available for External Ids for RF00001-320 Gene

Summaries for RF00001-320 Gene

GeneCards Summary for RF00001-320 Gene

RF00001-320 is an RNA Gene, and is affiliated with the rRNA class.

Rfam classification for RF00001-320 Gene

Additional gene information for RF00001-320 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RF00001-320 Gene

Genomics for RF00001-320 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for RF00001-320 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH08J017762 Enhancer 0.4 Ensembl 250.7 +0.5 483 0.4 RXRA RBM22 ZNF680 ATF3 RF00001-320 RNA5SP256 piR-45873-002 MTUS1 RF00017-6858 PDGFRL RF00017-6860
GH08J017746 Enhancer 0.3 dbSUPER 250.7 -1.0 -955 0.6 RBM22 RF00001-320 RNA5SP256 ENSG00000249258 lnc-FGL1-3 MTUS1 RF00017-6858 PDGFRL RF00017-6860
GH08J017732 Promoter/Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -12.2 -12241 6.5 BCL11A FEZF1 CTCF SIN3A IRF4 SMAD4 SAP130 RXRA TEAD3 RBM22 lnc-FGL1-3 ENSG00000253215 FGL1 NAT1 RNA5SP256 RF00001-320 MTUS1 RF00017-6858 PDGFRL RF00017-6860
GH08J017740 Enhancer 0.8 ENCODE CraniofacialAtlas dbSUPER 0.4 -5.7 -5696 4.4 RCOR1 SP7 HLF SPI1 NFE2L2 lnc-FGL1-3 RNA5SP256 RF00001-320 MTUS1 RF00017-6858 PDGFRL RF00017-6860
GH08J017745 Enhancer 0.3 dbSUPER 0.7 -2.1 -2063 0.9 ZSCAN5C RF00001-320 RNA5SP256 lnc-FGL1-3 MTUS1 RF00017-6858 PDGFRL RF00017-6860
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RF00001-320 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RF00001-320 Gene

Latest Assembly
chr8:17,748,118-17,748,221
(GRCh38/hg38)
Size:
104 bases
Orientation:
Plus strand

Genomic View for RF00001-320 Gene

Genes around RF00001-320 on UCSC Golden Path with GeneCards custom track
RF00001-320 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

RF00001-320 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RF00001-320 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for RF00001-320 Gene

Proteins for RF00001-320 Gene

Products:

  1. Antibodies for research
  2. Protein products for research
  3. Assay products for research

Post-translational modifications for RF00001-320 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RF00001-320 Gene

Domains & Families for RF00001-320 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RF00001-320 Gene

Function for RF00001-320 Gene

Products:

  1. Animal Models for research
  2. CRISPR products for research
  3. miRNA products for research
  4. Inhibitory RNAs for research
  5. Clone products for research
  6. Cell Lines for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RF00001-320 Gene

Localization for RF00001-320 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RF00001-320 Gene

Pathways & Interactions for RF00001-320 Gene

PathCards logo

SuperPathways for RF00001-320 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RF00001-320 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RF00001-320 Gene

Drugs & Compounds for RF00001-320 Gene

Products:

  1. Drug products for research
No Compound Related Data Available

Transcripts for RF00001-320 Gene

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  1. CRISPR products for research
  2. miRNA products for research
  3. Inhibitory RNAs for research
  4. Clone products for research

Non-coding RNA (ncRNA) Transcripts from RNAcentral for RF00001-320 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00006EC304_9606 rRNA 104 1

Rfam: RF00001,

RF00001-320 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for RF00001-320 Gene

No ASD Table

Relevant External Links for RF00001-320 Gene

GeneLoc Exon Structure for
RF00001-320

No data available for mRNA/cDNA for RF00001-320 Gene

Expression for RF00001-320 Gene

Products:

  1. Primer products for research
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RF00001-320 Gene

Orthologs for RF00001-320 Gene

No data available for Orthologs and Evolution for RF00001-320 Gene

Paralogs for RF00001-320 Gene

No data available for Paralogs for RF00001-320 Gene

Variants for RF00001-320 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for RF00001-320 Gene

Disorders for RF00001-320 Gene

No disorders were found for RF00001-320 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RF00001-320 Gene

Publications for RF00001-320 Gene

No publications were found for RF00001-320 Gene.

No data available for Mastermind for RF00001-320 Gene

Products for RF00001-320 Gene

Sources for RF00001-320 Gene