RF00001-148 Gene (RNA Gene)

 

GC17M074418
GIFtS:
3

Aliases for RF00001-148 Gene

Subcategory (RNA class) for RF00001-148 Gene

rRNA

Quality Score for this RNA gene is

11

Aliases for RF00001-148 Gene

No data available for External Ids for RF00001-148 Gene

Summaries for RF00001-148 Gene

GeneCards Summary for RF00001-148 Gene

RF00001-148 is an RNA Gene, and is affiliated with the rRNA class.

Rfam classification for RF00001-148 Gene

Additional gene information for RF00001-148 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RF00001-148 Gene

Genomics for RF00001-148 Gene

GeneHancer (GH) Regulatory Elements for RF00001-148 Gene

Promoters and enhancers for RF00001-148 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH17J074417 Enhancer 1.3 Ensembl ENCODE dbSUPER 750.6 -0.1 -97 2.8 GTF3C2 ZNF24 LCORL MLX RBPJ SMARCE1 TCF7L2 NR2F6 CREB1 MIXL1 RF00001-148 RNA5SP448 GGA3 NUP85 NT5C GPRC5C RF00017-2537
GH17J074416 Enhancer 0.8 Ensembl ENCODE dbSUPER 750.6 +1.7 1703 0.4 NR2F6 ZBTB33 ZKSCAN8 SMAD4 RARA RF00001-148 RNA5SP448 lnc-GPR142-1 RF00017-2537
GH17J074394 Enhancer 1.3 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.3 +22.7 22714 2.3 ZNF639 FOSL2 ZNF316 NFE2 ESRRA MAFG DPF2 MAFK FOSL1 GATA3 RAB37 GPR142 GPRC5C CD300A CD300E CD300LD GRIN2C FADS6 lnc-GPR142-1 RF00001-148
GH17J074408 Enhancer 1 Ensembl ENCODE dbSUPER 0.4 +8.8 8849 1.1 USF2 MAX RAD21 ZNF121 MNT CTCF ZNF384 REST EGR1 E2F5 GPRC5C RNA5SP448 RF00001-148 lnc-GPR142-1 RF00017-2537
GH17J074419 Enhancer 0.6 Ensembl ENCODE dbSUPER 0.6 -2.4 -2435 1.5 ZNF652 GPRC5C RF00001-148 RNA5SP448 RF00017-2537
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RF00001-148 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RF00001-148 Gene

Genomic Locations for RF00001-148 Gene
chr17:74,417,594-74,417,704
(GRCh38/hg38)
Size:
111 bases
Orientation:
Minus strand

Genomic View for RF00001-148 Gene

Genes around RF00001-148 on UCSC Golden Path with GeneCards custom track

RF00001-148 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RF00001-148 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for RF00001-148 Gene

Proteins for RF00001-148 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for RF00001-148 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RF00001-148 Gene

Domains & Families for RF00001-148 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RF00001-148 Gene

Function for RF00001-148 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RF00001-148 Gene

Localization for RF00001-148 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RF00001-148 Gene

Pathways & Interactions for RF00001-148 Gene

PathCards logo

SuperPathways for RF00001-148 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RF00001-148 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RF00001-148 Gene

Drugs & Compounds for RF00001-148 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for RF00001-148 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for RF00001-148 Gene

(1) RNACentral transcripts :
(1) Rfam transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for RF00001-148 Gene

No ASD Table

Relevant External Links for RF00001-148 Gene

GeneLoc Exon Structure for
RF00001-148

Expression for RF00001-148 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RF00001-148 Gene

Orthologs for RF00001-148 Gene

No data available for Orthologs and Evolution for RF00001-148 Gene

Paralogs for RF00001-148 Gene

No data available for Paralogs for RF00001-148 Gene

Variants for RF00001-148 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for RF00001-148 Gene

Disorders for RF00001-148 Gene

No disorders were found for RF00001-148 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RF00001-148 Gene

Publications for RF00001-148 Gene

No publications were found for RF00001-148 Gene.

No data available for External Links for RF00001-148 Gene

Products for RF00001-148 Gene

Sources for RF00001-148 Gene