RF00001-139 Gene (RNA Gene)

 

GC16M084262
GIFtS:
3
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Aliases for RF00001-139 Gene

Subcategory (RNA class) for RF00001-139 Gene

rRNA

Number of RNA Genes sources:

1 / 17

Aliases for RF00001-139 Gene

No data available for External Ids for RF00001-139 Gene

Summaries for RF00001-139 Gene

GeneCards Summary for RF00001-139 Gene

RF00001-139 is an RNA Gene, and is affiliated with the rRNA class.

Rfam classification for RF00001-139 Gene

Additional gene information for RF00001-139 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RF00001-139 Gene

Genomics for RF00001-139 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for RF00001-139 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH16J084266 Enhancer 1 Ensembl ENCODE 0.7 -3.7 -3713 0.7 SP1 CREB1 TFE3 SIX5 FOS ZNF143 PKNOX1 RXRB REST NR2C1 WFDC1 KCNG4 NECAB2 RF00001-139 RNA5SP433
GH16J084283 Enhancer 1 Ensembl ENCODE CraniofacialAtlas 0.4 -21.5 -21470 2.4 CEBPG RXRB SP1 CEBPA CEBPB NR2F2 SMAD4 RXRA KLF1 RARA WFDC1 RF00001-139 RNA5SP433 KCNG4
GH16J084285 Enhancer 1 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 -24.0 -24042 2.5 SP1 ZKSCAN1 NR2F2 POLR2A RXRA ZNF24 WFDC1 RF00001-139 RNA5SP433 KCNG4
GH16J084281 Enhancer 0.8 FANTOM5 ENCODE 0.4 -18.3 -18333 0.2 SP1 DDX20 PKNOX1 PBX2 CEBPB SP2 MBD2 NFYA NFYB FOS ADAD2 DNAAF1 WFDC1 RNA5SP433 RF00001-139 KCNG4
GH16J084277 Enhancer 0.7 Ensembl 0.4 -14.5 -14521 0.5 CTCF JUND ZNF143 REST RAD21 IRF2 TRIM22 HMBOX1 SMARCA5 ZNF444 ENSG00000261471 RNA5SP433 RF00001-139 WFDC1 KCNG4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RF00001-139 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RF00001-139 Gene

Genomic Locations for RF00001-139 Gene
chr16:84,262,805-84,262,928
(GRCh38/hg38)
Size:
124 bases
Orientation:
Minus strand

Genomic View for RF00001-139 Gene

Genes around RF00001-139 on UCSC Golden Path with GeneCards custom track
RF00001-139 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

RF00001-139 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RF00001-139 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for RF00001-139 Gene

Proteins for RF00001-139 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for RF00001-139 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RF00001-139 Gene

Domains & Families for RF00001-139 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RF00001-139 Gene

Function for RF00001-139 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for RF00001-139 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RF00001-139 Gene

Localization for RF00001-139 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RF00001-139 Gene

Pathways & Interactions for RF00001-139 Gene

PathCards logo

SuperPathways for RF00001-139 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RF00001-139 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RF00001-139 Gene

Drugs & Compounds for RF00001-139 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for RF00001-139 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for RF00001-139 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00006C93F2_9606 rRNA 124 1

Rfam: RF00001,

RF00001-139 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for RF00001-139 Gene

No ASD Table

Relevant External Links for RF00001-139 Gene

GeneLoc Exon Structure for
RF00001-139

No data available for mRNA/cDNA for RF00001-139 Gene

Expression for RF00001-139 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RF00001-139 Gene

Orthologs for RF00001-139 Gene

No data available for Orthologs and Evolution for RF00001-139 Gene

Paralogs for RF00001-139 Gene

No data available for Paralogs for RF00001-139 Gene

Variants for RF00001-139 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for RF00001-139 Gene

Disorders for RF00001-139 Gene

No disorders were found for RF00001-139 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RF00001-139 Gene

Publications for RF00001-139 Gene

No publications were found for RF00001-139 Gene.

No data available for Mastermind for RF00001-139 Gene

Products for RF00001-139 Gene

Sources for RF00001-139 Gene