RF00001-138 Gene (RNA Gene)

 

GC16M084039
GIFtS:
4

Aliases for RF00001-138 Gene

Subcategory (RNA class) for RF00001-138 Gene

rRNA

Quality Score for this RNA gene is

11

Aliases for RF00001-138 Gene

No data available for External Ids for RF00001-138 Gene

Summaries for RF00001-138 Gene

GeneCards Summary for RF00001-138 Gene

RF00001-138 is an RNA Gene, and is affiliated with the rRNA class.

Rfam classification for RF00001-138 Gene

Additional gene information for RF00001-138 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RF00001-138 Gene

Genomics for RF00001-138 Gene

GeneHancer (GH) Regulatory Elements for RF00001-138 Gene

Promoters and enhancers for RF00001-138 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH16J084040 Enhancer 0.9 FANTOM5 Ensembl ENCODE dbSUPER 750.6 -0.9 -866 1.2 CREB1 RFX1 NFIB ENSG00000285792 RF00001-138 RNA5SP432 SLC38A8 MBTPS1 NECAB2
GH16J083995 Promoter/Enhancer 1.4 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.3 +44.2 44236 0.8 NFYC SP1 RFX1 DDX20 ZXDB BMI1 USF1 RFX5 SIN3A NECAB2 DNAAF1 RNA5SP432 SLC38A8 ENSG00000260300 KLHL36 HSDL1 ADAD2 piR-33402 RF00001-138
GH16J083968 Promoter/Enhancer 1.9 EPDnew Ensembl CraniofacialAtlas dbSUPER 0.2 +71.4 71433 1.2 ZNF785 CTCF CTBP1 ZNF133 MTA3 NFIB IKZF1 ZNF148 MCM2 MTA1 NECAB2 TAF1C ENSG00000261243 MBTPS1 KLHL36 CRISPLD2 ENSG00000260859 MEAK7 HSDL1 ENSG00000250685
GH16J084021 Enhancer 0.9 Ensembl dbSUPER 0.4 +16.3 16331 0.2 RBPJ ELF3 CEBPA GATAD2A RXRB RCOR2 FOXA2 SAP130 MIER3 TEAD1 RF00001-138 SLC38A8 piR-33402
GH16J084013 Enhancer 0.8 ENCODE 0.3 +26.0 25991 1 USF2 L3MBTL2 MAX HDGF MNT TEAD4 CBFA2T2 MYC SMARCA4 IKZF1 SLC38A8 RNA5SP432 DNAAF1 HSDL1 RF00001-138 piR-33402
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RF00001-138 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RF00001-138 Gene

Genomic Locations for RF00001-138 Gene
chr16:84,039,919-84,040,032
(GRCh38/hg38)
Size:
114 bases
Orientation:
Minus strand

Genomic View for RF00001-138 Gene

Genes around RF00001-138 on UCSC Golden Path with GeneCards custom track

RF00001-138 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RF00001-138 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for RF00001-138 Gene

Proteins for RF00001-138 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for RF00001-138 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RF00001-138 Gene

Domains & Families for RF00001-138 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RF00001-138 Gene

Function for RF00001-138 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for RF00001-138 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RF00001-138 Gene

Localization for RF00001-138 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RF00001-138 Gene

Pathways & Interactions for RF00001-138 Gene

PathCards logo

SuperPathways for RF00001-138 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RF00001-138 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RF00001-138 Gene

Drugs & Compounds for RF00001-138 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for RF00001-138 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for RF00001-138 Gene

(1) RNACentral transcripts :
(1) Rfam transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for RF00001-138 Gene

No ASD Table

Relevant External Links for RF00001-138 Gene

GeneLoc Exon Structure for
RF00001-138

Expression for RF00001-138 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RF00001-138 Gene

Orthologs for RF00001-138 Gene

No data available for Orthologs and Evolution for RF00001-138 Gene

Paralogs for RF00001-138 Gene

No data available for Paralogs for RF00001-138 Gene

Variants for RF00001-138 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for RF00001-138 Gene

Disorders for RF00001-138 Gene

No disorders were found for RF00001-138 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RF00001-138 Gene

Publications for RF00001-138 Gene

No publications were found for RF00001-138 Gene.

No data available for External Links for RF00001-138 Gene

Products for RF00001-138 Gene

Sources for RF00001-138 Gene