Aliases for RF00001-138 Gene

Subcategory (RNA class) for RF00001-138 Gene

rRNA

Number of RNA Genes sources:

1 / 17

Aliases for RF00001-138 Gene

No data available for External Ids for RF00001-138 Gene

Summaries for RF00001-138 Gene

GeneCards Summary for RF00001-138 Gene

RF00001-138 is an RNA Gene, and is affiliated with the rRNA class.

Rfam classification for RF00001-138 Gene

Additional gene information for RF00001-138 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RF00001-138 Gene

Genomics for RF00001-138 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RF00001-138 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J084040 Enhancer 0.9 FANTOM5 Ensembl ENCODE dbSUPER 600.7 -0.9 -866 1.2 CREB1 RFX1 BHLHE40 NFIB ENSG00000285792 RF00001-138 RNA5SP432 SLC38A8 MBTPS1 NECAB2
GH16J083995 Promoter/Enhancer 1.4 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.3 +44.2 44236 0.8 RFX1 ZXDB DDX20 BMI1 ESR1 USF1 MYNN ZNF768 SIN3A RFX5 NECAB2 DNAAF1 RNA5SP432 SLC38A8 HSDL1 ADAD2 RF00001-138
GH16J084021 Enhancer 0.8 Ensembl dbSUPER 0.4 +16.3 16331 0.2 GATAD2A RCOR2 RXRB CEBPA ESR1 FOXA2 TEAD1 CREM FOXP1 SAP130 SLC38A8 RF00001-138 NECAB2
GH16J084032 Enhancer 0.6 Ensembl dbSUPER 0.4 +7.4 7431 0.4 ZIC2 ESR1 ZFHX2 EGR2 KLF14 OSGIN1 SLC38A8 TAF1C RF00001-138 NECAB2
GH16J084013 Enhancer 0.8 ENCODE 0.3 +26.0 25991 1 PRDM10 IKZF1 JUND PKNOX1 REST SP1 DPF2 HDAC1 ZNF341 EP300 RNA5SP432 SLC38A8 DNAAF1 HSDL1 RF00001-138 NECAB2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RF00001-138 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RF00001-138 Gene

Genomic Locations for RF00001-138 Gene
chr16:84,039,919-84,040,032
(GRCh38/hg38)
Size:
114 bases
Orientation:
Minus strand

Genomic View for RF00001-138 Gene

Genes around RF00001-138 on UCSC Golden Path with GeneCards custom track
RF00001-138 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

RF00001-138 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RF00001-138 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for RF00001-138 Gene

Proteins for RF00001-138 Gene

Post-translational modifications for RF00001-138 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RF00001-138 Gene

Domains & Families for RF00001-138 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RF00001-138 Gene

Function for RF00001-138 Gene

Phenotypes From GWAS Catalog for RF00001-138 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RF00001-138 Gene

Localization for RF00001-138 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RF00001-138 Gene

Pathways & Interactions for RF00001-138 Gene

PathCards logo

SuperPathways for RF00001-138 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RF00001-138 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RF00001-138 Gene

Drugs & Compounds for RF00001-138 Gene

No Compound Related Data Available

Transcripts for RF00001-138 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for RF00001-138 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00006E8279_9606 rRNA 114 1

Rfam: RF00001,

RF00001-138 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for RF00001-138 Gene

No ASD Table

Relevant External Links for RF00001-138 Gene

GeneLoc Exon Structure for
RF00001-138

No data available for mRNA/cDNA for RF00001-138 Gene

Expression for RF00001-138 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RF00001-138 Gene

Orthologs for RF00001-138 Gene

No data available for Orthologs and Evolution for RF00001-138 Gene

Paralogs for RF00001-138 Gene

No data available for Paralogs for RF00001-138 Gene

Variants for RF00001-138 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for RF00001-138 Gene

Disorders for RF00001-138 Gene

No disorders were found for RF00001-138 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RF00001-138 Gene

Publications for RF00001-138 Gene

No publications were found for RF00001-138 Gene.

No data available for Mastermind for RF00001-138 Gene

Products for RF00001-138 Gene

Sources for RF00001-138 Gene