Aliases for RF00001-049 Gene

Subcategory (RNA class) for RF00001-049 Gene

rRNA

Number of RNA Genes sources:

1 / 14

Aliases for RF00001-049 Gene

No data available for External Ids for RF00001-049 Gene

Summaries for RF00001-049 Gene

GeneCards Summary for RF00001-049 Gene

RF00001-049 is an RNA Gene, and is affiliated with the rRNA class.

Rfam classification for RF00001-049 Gene

Additional gene information for RF00001-049 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RF00001-049 Gene

Genomics for RF00001-049 Gene

GeneHancer (GH) Regulatory Elements for RF00001-049 Gene

Promoters and enhancers for RF00001-049 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J106941 Enhancer 1.2 FANTOM5 Ensembl ENCODE 0.3 -27.7 -27720 2.2 TAF9B ZNF316 TRIM24 CEBPG NCOR1 MAX ZNF592 PBX2 NFE2 EHMT2 piR-58297-057 RF00001-049 RNA5SP325 SORCS1
GH10J106973 Enhancer 0.5 Ensembl 0.7 +4.3 4280 2.6 CREB1 NFIC ATF2 CTBP1 PKNOX1 ATF7 NFIB RF00001-049 RNA5SP325 SORCS1
GH10J106997 Enhancer 0.9 FANTOM5 Ensembl 0.3 +27.8 27779 4 MXI1 NCOR1 ZNF316 GATA3 SPI1 NFE2 TAL1 HDAC2 TCF12 RCOR1 SORCS1 RF00001-049 RNA5SP325
GH10J106931 Enhancer 1 FANTOM5 Ensembl 0.3 -39.2 -39220 3.6 EP300 SP1 TRIM28 RELA FOXA2 TCF7L2 MEF2B ZBTB33 JUND BATF piR-58297-057 RF00001-049 RNA5SP325 SORCS1
GH10J106980 Enhancer 0.6 Ensembl 0.4 +11.3 11280 1.8 EP300 CTCF RAD21 TCF7L2 SMC3 TARDBP FOXA1 CEBPG FOXM1 ATF4 SORCS1 RNA5SP325 RF00001-049
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RF00001-049 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RF00001-049 Gene

Genomic Locations for RF00001-049 Gene
chr10:106,970,021-106,970,132
(GRCh38/hg38)
Size:
112 bases
Orientation:
Plus strand

Genomic View for RF00001-049 Gene

Genes around RF00001-049 on UCSC Golden Path with GeneCards custom track

RF00001-049 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RF00001-049 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for RF00001-049 Gene

Proteins for RF00001-049 Gene

Post-translational modifications for RF00001-049 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RF00001-049 Gene

Domains & Families for RF00001-049 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RF00001-049 Gene

Function for RF00001-049 Gene

miRNA for RF00001-049 Gene

miRTarBase miRNAs that target RF00001-049

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for RF00001-049 Gene

Localization for RF00001-049 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RF00001-049 Gene

Pathways & Interactions for RF00001-049 Gene

PathCards logo

SuperPathways for RF00001-049 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for RF00001-049 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RF00001-049 Gene

Drugs & Compounds for RF00001-049 Gene

No Compound Related Data Available

Transcripts for RF00001-049 Gene

mRNA/cDNA for RF00001-049 Gene

1 RNACentral transcripts :
1 Rfam transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for RF00001-049 Gene

No ASD Table

Relevant External Links for RF00001-049 Gene

GeneLoc Exon Structure for
RF00001-049

Expression for RF00001-049 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RF00001-049 Gene

Orthologs for RF00001-049 Gene

No data available for Orthologs and Evolution for RF00001-049 Gene

Paralogs for RF00001-049 Gene

No data available for Paralogs for RF00001-049 Gene

Variants for RF00001-049 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for RF00001-049 Gene

Disorders for RF00001-049 Gene

No disorders were found for RF00001-049 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RF00001-049 Gene

Publications for RF00001-049 Gene

No publications were found for RF00001-049 Gene.

No data available for Mastermind for RF00001-049 Gene

Products for RF00001-049 Gene

Sources for RF00001-049 Gene