RF00001-010 Gene (RNA Gene)

 

GC01M087454
GIFtS:
3

Aliases for RF00001-010 Gene

Subcategory (RNA class) for RF00001-010 Gene

rRNA

Quality Score for this RNA gene is

11

Aliases for RF00001-010 Gene

No data available for External Ids for RF00001-010 Gene

Summaries for RF00001-010 Gene

GeneCards Summary for RF00001-010 Gene

RF00001-010 is an RNA Gene, and is affiliated with the rRNA class.

Rfam classification for RF00001-010 Gene

Additional gene information for RF00001-010 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RF00001-010 Gene

Genomics for RF00001-010 Gene

GeneHancer (GH) Regulatory Elements for RF00001-010 Gene

Promoters and enhancers for RF00001-010 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH01J087451 Enhancer 0.3 Ensembl 750.6 +1.7 1672 0.2 ZNF133 JUNB RF00001-010 RNA5SP52 LOC105378834
GH01J087452 Enhancer 0.3 Ensembl 750.6 +0.8 772 0.4 NANOG RF00001-010 RNA5SP52 LOC105378834
GH01J087449 Enhancer 1.2 FANTOM5 Ensembl ENCODE 0.6 +3.2 3173 2.4 ZNF24 SP1 ZNF133 ETV6 RELA RAD21 MLLT1 POLR2A ZNF687 CREM LOC105378834 RF00001-010 RNA5SP52
GH01J087472 Enhancer 0.8 Ensembl ENCODE 0.4 -19.8 -19769 1.7 SMARCE1 BCL6B ZNF629 SOX6 ZSCAN5C ZXDB FOSL1 GATA3 WT1 JUND RF00001-010 RNA5SP52 LOC105378835
GH01J087463 Enhancer 0.5 Ensembl 0.4 -10.9 -10928 1 CREM EED RUNX3 JUNB WT1 BATF ZFP91 ATF2 RNA5SP52 RF00001-010 LOC105378835
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RF00001-010 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RF00001-010 Gene

Genomic Locations for RF00001-010 Gene
chr1:87,453,240-87,453,373
(GRCh38/hg38)
Size:
134 bases
Orientation:
Minus strand

Genomic View for RF00001-010 Gene

Genes around RF00001-010 on UCSC Golden Path with GeneCards custom track

RF00001-010 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RF00001-010 Gene

No data available for Cytogenetic band and RefSeq DNA sequence for RF00001-010 Gene

Proteins for RF00001-010 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for RF00001-010 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RF00001-010 Gene

Domains & Families for RF00001-010 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RF00001-010 Gene

Function for RF00001-010 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RF00001-010 Gene

Localization for RF00001-010 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RF00001-010 Gene

Pathways & Interactions for RF00001-010 Gene

PathCards logo

SuperPathways for RF00001-010 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RF00001-010 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RF00001-010 Gene

Drugs & Compounds for RF00001-010 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for RF00001-010 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for RF00001-010 Gene

(1) RNACentral transcripts :
(1) Rfam transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for RF00001-010 Gene

No ASD Table

Relevant External Links for RF00001-010 Gene

GeneLoc Exon Structure for
RF00001-010

Expression for RF00001-010 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RF00001-010 Gene

Orthologs for RF00001-010 Gene

No data available for Orthologs and Evolution for RF00001-010 Gene

Paralogs for RF00001-010 Gene

No data available for Paralogs for RF00001-010 Gene

Variants for RF00001-010 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for RF00001-010 Gene

Disorders for RF00001-010 Gene

No disorders were found for RF00001-010 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RF00001-010 Gene

Publications for RF00001-010 Gene

No publications were found for RF00001-010 Gene.

No data available for External Links for RF00001-010 Gene

Products for RF00001-010 Gene

Sources for RF00001-010 Gene