Aliases for RERG-AS1 Gene

Subcategory (RNA class) for RERG-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for RERG-AS1 Gene

  • RERG Antisense RNA 1 2 3 5
  • RERG-AS1 2 5 165
  • RERG Antisense RNA 1 (Non-Protein Coding) 2 3
  • NONHSAG010584.2 91
  • HSALNG0089539 164

External Ids for RERG-AS1 Gene

Previous GeneCards Identifiers for RERG-AS1 Gene

  • GC00U933308
  • GC12P015305

Summaries for RERG-AS1 Gene

GeneCards Summary for RERG-AS1 Gene

RERG-AS1 (RERG Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for RERG-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RERG-AS1 Gene

Genomics for RERG-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RERG-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J015151 Enhancer 1.1 Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 +0.7 710 2.3 CREB1 CTCF RFX1 RAD21 EZH2 ATF7 SP1 CEBPB FOS JUN RERG-AS1 RERG lnc-ARHGDIB-3 LOC107984506 PTPRO PDE6H
GH12J015162 Enhancer 1 Ensembl ENCODE dbSUPER 0.4 +12.5 12540 3.9 CREB1 SP1 SMARCC1 NR3C1 CEBPB ZSCAN5C CHD2 JUN RCOR1 GABPA lnc-ARHGDIB-3 RERG-AS1 PTPRO RERG PDE6H
GH12J015155 Enhancer 0.6 Ensembl ENCODE dbSUPER 0.7 +4.4 4378 2.6 NR2F2 RERG RERG-AS1 lnc-ARHGDIB-3 PTPRO PDE6H
GH12J015154 Enhancer 0.3 Ensembl dbSUPER 0.7 +2.3 2278 0.4 RERG-AS1 lnc-ARHGDIB-3 PTPRO PDE6H RERG
GH12J015131 Enhancer 0.5 Ensembl ENCODE 0.4 -20.2 -20195 0.5 FOSL2 SMARCA4 piR-43105-102 RERG-AS1 LOC107984506 PDE6H PTPRO RERG
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RERG-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RERG-AS1 Gene

Genomic Locations for RERG-AS1 Gene
chr12:15,151,923-15,155,284
(GRCh38/hg38)
Size:
3,362 bases
Orientation:
Plus strand
chr12:15,304,857-15,308,217
(GRCh37/hg19)
Size:
3,361 bases
Orientation:
Plus strand

Genomic View for RERG-AS1 Gene

Genes around RERG-AS1 on UCSC Golden Path with GeneCards custom track
RERG-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
RERG-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RERG-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RERG-AS1 Gene

Proteins for RERG-AS1 Gene

Post-translational modifications for RERG-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RERG-AS1 Gene

Domains & Families for RERG-AS1 Gene

Gene Families for RERG-AS1 Gene

genes like me logo Genes that share domains with RERG-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RERG-AS1 Gene

Function for RERG-AS1 Gene

Phenotypes From GWAS Catalog for RERG-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RERG-AS1 Gene

Localization for RERG-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RERG-AS1 Gene

Pathways & Interactions for RERG-AS1 Gene

PathCards logo

SuperPathways for RERG-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RERG-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RERG-AS1 Gene

Drugs & Compounds for RERG-AS1 Gene

No Compound Related Data Available

Transcripts for RERG-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for RERG-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000055A410_9606 lncRNA 337 6

HGNC: 39990,

RefSeq: NR_046559,

Ensembl: ENST00000541243 (view in UCSC) ,

LncBook: HSALNT0186037,

LNCipedia: RERG-AS1:1,

NONCODE: NONHSAT027110.2,

URS00009BF876_9606 lncRNA 337 2

LncBook: HSALNT0186038,

NONCODE: NONHSAT161892.1,

URS00008B38F6_9606 lncRNA 335 2

LncBook: HSALNT0186039,

LNCipedia: RERG-AS1:2,

RERG-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for RERG-AS1 Gene

2 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for RERG-AS1 Gene

No ASD Table

Relevant External Links for RERG-AS1 Gene

GeneLoc Exon Structure for
RERG-AS1

Expression for RERG-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RERG-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for RERG-AS1 Gene

This gene is overexpressed in Kidney - Cortex (x17.6) and Uterus (x6.3).
genes like me logo Genes that share expression patterns with RERG-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RERG-AS1 Gene

Orthologs for RERG-AS1 Gene

Evolution for RERG-AS1 Gene

ENSEMBL:
Gene Tree for RERG-AS1 (if available)
TreeFam:
Gene Tree for RERG-AS1 (if available)

No data available for Orthologs for RERG-AS1 Gene

Paralogs for RERG-AS1 Gene

No data available for Paralogs for RERG-AS1 Gene

Variants for RERG-AS1 Gene

Additional dbSNP identifiers (rs#s) for RERG-AS1 Gene

Additional Variant Information for RERG-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RERG-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RERG-AS1 Gene

Disorders for RERG-AS1 Gene

Additional Disease Information for RERG-AS1

No disorders were found for RERG-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RERG-AS1 Gene

Publications for RERG-AS1 Gene

No publications were found for RERG-AS1 Gene.

Products for RERG-AS1 Gene

Sources for RERG-AS1 Gene