Aliases for RERE-AS1 Gene

Data sources for RERE-AS1 Gene:

RNA type for RERE-AS1 Gene

lncRNA

Aliases for RERE-AS1 Gene

External Ids for RERE-AS1 Gene

Summaries for RERE-AS1 Gene

GeneCards Summary for RERE-AS1 Gene

RERE-AS1 (RERE Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for RERE-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RERE-AS1 Gene

Genomics for RERE-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RERE-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RERE-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RERE-AS1 Gene

Latest Assembly
chr1:8,423,457-8,435,791
(GRCh38/hg38)
Size:
12,335 bases
Orientation:
Plus strand

Previous Assembly
chr1:8,484,705-8,495,076
(GRCh37/hg19 by Entrez Gene)
Size:
10,372 bases
Orientation:
Plus strand

chr1:8,484,705-8,494,898
(GRCh37/hg19 by Ensembl)
Size:
10,194 bases
Orientation:
Plus strand

Genomic View for RERE-AS1 Gene

Genes around RERE-AS1 on UCSC Golden Path with GeneCards custom track
RERE-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
RERE-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RERE-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RERE-AS1 Gene

Proteins for RERE-AS1 Gene

Post-translational modifications for RERE-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RERE-AS1 Gene

Domains & Families for RERE-AS1 Gene

Gene Families for RERE-AS1 Gene

genes like me logo Genes that share domains with RERE-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RERE-AS1 Gene

Function for RERE-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RERE-AS1 Gene

Localization for RERE-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RERE-AS1 Gene

Pathways & Interactions for RERE-AS1 Gene

PathCards logo

SuperPathways for RERE-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RERE-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RERE-AS1 Gene

Drugs & Compounds for RERE-AS1 Gene

No Compound Related Data Available

Transcripts for RERE-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for RERE-AS1 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00003FC498_9606 lncRNA 439 4

Ensembl: ENST00000444276 (view in UCSC) ,

LncBook: HSALNT0001342,

LNCipedia: lnc-SLC45A1-1:2,

NONCODE: NONHSAT000752.2,

URS00007E47C9_9606 lncRNA 698 3

RefSeq: NR_125999,

LncBook: HSALNT0001340,

LNCipedia: lnc-SLC45A1-1:4,

URS000028F8F7_9606 lncRNA 516 3

Ensembl: ENST00000449895 (view in UCSC) ,

LNCipedia: lnc-SLC45A1-1:1,

NONCODE: NONHSAT000751.2,

URS0000EF6D2A_9606 lncRNA 1052 1

Ensembl: ENST00000653698 (view in UCSC) ,

URS00008BF494_9606 lncRNA 546 3

LncBook: HSALNT0001345,

LNCipedia: lnc-SLC45A1-1:3,

NONCODE: NONHSAT000753.2,

RERE-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for RERE-AS1 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for RERE-AS1 Gene

No ASD Table

Relevant External Links for RERE-AS1 Gene

GeneLoc Exon Structure for
RERE-AS1

Expression for RERE-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RERE-AS1 Gene

Orthologs for RERE-AS1 Gene

Evolution for RERE-AS1 Gene

ENSEMBL:
Gene Tree for RERE-AS1 (if available)
TreeFam:
Gene Tree for RERE-AS1 (if available)
Alliance of Genome Resources:
Additional Orthologs for RERE-AS1

No data available for Orthologs for RERE-AS1 Gene

Paralogs for RERE-AS1 Gene

No data available for Paralogs for RERE-AS1 Gene

Variants for RERE-AS1 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for RERE-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for RERE-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RERE-AS1
Leiden Open Variation Database (LOVD)
RERE-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RERE-AS1 Gene

Disorders for RERE-AS1 Gene

Additional Disease Information for RERE-AS1

Open Targets Platform
Open Targets Platform

No disorders were found for RERE-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RERE-AS1 Gene

Publications for RERE-AS1 Gene

  1. Identification of novel genetic Loci associated with thyroid peroxidase antibodies and clinical thyroid disease. (PMID: 24586183) Medici M … Peeters RP (PLoS genetics 2014) 3

Products for RERE-AS1 Gene

Sources for RERE-AS1 Gene