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RELA Gene(Protein Coding)

RELA Proto-Oncogene, NF-KB Subunit

GCID:
GC11M065671
GIFtS:
56
Genes Participants
UDN Logo

Aliases for RELA Gene

Aliases for RELA Gene

  • RELA Proto-Oncogene, NF-KB Subunit 2 3 5
  • Nuclear Factor Of Kappa Light Polypeptide Gene Enhancer In B-Cells 3 2 3 4
  • V-Rel Avian Reticuloendotheliosis Viral Oncogene Homolog A 2 3
  • Nuclear Factor NF-Kappa-B P65 Subunit 3 4
  • NFKB3 3 4
  • V-Rel Reticuloendotheliosis Viral Oncogene Homolog A 3
  • NF-Kappa-B Transcription Factor P65 3
  • Transcription Factor P65 3
  • NF-Kappa-B P65delta3 3
  • P65 3

External Ids for RELA Gene

Previous HGNC Symbols for RELA Gene

  • NFKB3

Previous GeneCards Identifiers for RELA Gene

  • GC11M067936
  • GC11M067102
  • GC11M065196
  • GC11M065172
  • GC11M065178
  • GC11M065421
  • GC11M061748

Summaries for RELA Gene

Entrez Gene Summary for RELA Gene

  • NF-kappa-B is a ubiquitous transcription factor involved in several biological processes. It is held in the cytoplasm in an inactive state by specific inhibitors. Upon degradation of the inhibitor, NF-kappa-B moves to the nucleus and activates transcription of specific genes. NF-kappa-B is composed of NFKB1 or NFKB2 bound to either REL, RELA, or RELB. The most abundant form of NF-kappa-B is NFKB1 complexed with the product of this gene, RELA. Four transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Sep 2011]

GeneCards Summary for RELA Gene

RELA (RELA Proto-Oncogene, NF-KB Subunit) is a Protein Coding gene. Diseases associated with RELA include Ependymoma and Reticuloendotheliosis. Among its related pathways are CLEC7A (Dectin-1) signaling and Immune response Fc epsilon RI pathway. Gene Ontology (GO) annotations related to this gene include DNA binding transcription factor activity and identical protein binding. An important paralog of this gene is REL.

UniProtKB/Swiss-Prot for RELA Gene

  • NF-kappa-B is a pleiotropic transcription factor present in almost all cell types and is the endpoint of a series of signal transduction events that are initiated by a vast array of stimuli related to many biological processes such as inflammation, immunity, differentiation, cell growth, tumorigenesis and apoptosis. NF-kappa-B is a homo- or heterodimeric complex formed by the Rel-like domain-containing proteins RELA/p65, RELB, NFKB1/p105, NFKB1/p50, REL and NFKB2/p52 and the heterodimeric p65-p50 complex appears to be most abundant one. The dimers bind at kappa-B sites in the DNA of their target genes and the individual dimers have distinct preferences for different kappa-B sites that they can bind with distinguishable affinity and specificity. Different dimer combinations act as transcriptional activators or repressors, respectively. NF-kappa-B is controlled by various mechanisms of post-translational modification and subcellular compartmentalization as well as by interactions with other cofactors or corepressors. NF-kappa-B complexes are held in the cytoplasm in an inactive state complexed with members of the NF-kappa-B inhibitor (I-kappa-B) family. In a conventional activation pathway, I-kappa-B is phosphorylated by I-kappa-B kinases (IKKs) in response to different activators, subsequently degraded thus liberating the active NF-kappa-B complex which translocates to the nucleus. NF-kappa-B heterodimeric p65-p50 and p65-c-Rel complexes are transcriptional activators. The NF-kappa-B p65-p65 complex appears to be involved in invasin-mediated activation of IL-8 expression. The inhibitory effect of I-kappa-B upon NF-kappa-B the cytoplasm is exerted primarily through the interaction with p65. p65 shows a weak DNA-binding site which could contribute directly to DNA binding in the NF-kappa-B complex. Associates with chromatin at the NF-kappa-B promoter region via association with DDX1. Essential for cytokine gene expression in T-cells (PubMed:15790681).

Gene Wiki entry for RELA Gene

Additional gene information for RELA Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RELA Gene

Genomics for RELA Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for RELA Gene

Promoters and enhancers for RELA Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH11J065661 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 650.7 +0.1 107 3.8 HDGF PKNOX1 FOXA2 SMAD1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 LOC105369347 RELA MAP3K11 RBM14 ENSG00000254461 RNASEH2C SF3B2 LOC105369352 KAT5 SF1
GH11J065470 Promoter/Enhancer 2.9 VISTA FANTOM5 Ensembl ENCODE dbSUPER 109.9 +173.0 173010 40 CLOCK MLX ZFP64 FEZF1 DMAP1 YBX1 IRF4 YY1 SLC30A9 ZNF213 LOC105369346 SF1 POLA2 PCNX3 ZFPL1 EIF1AD SART1 LOC105369352 MUS81 KAT5
GH11J065414 Promoter/Enhancer 2.4 FANTOM5 Ensembl ENCODE dbSUPER 81.1 +238.9 238913 18.8 CLOCK MLX ZFP64 FEZF1 DMAP1 YBX1 IRF4 YY1 SLC30A9 ZNF213 NEAT1 ENSG00000277599 ENSG00000278050 ENSG00000278144 GC11P065538 SF1 LOC105369352 ZFPL1 POLA2 EIF1AD
GH11J065851 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 53.4 -194.4 -194390 12.2 CLOCK MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 MUS81 CFL1 EIF1AD ENSG00000258297 POLA2 RBM14 SART1 PCNX3 RBM4 ZFPL1
GH11J065886 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 39.9 -232.4 -232364 18.4 CLOCK ZFP64 FEZF1 DMAP1 YY1 SLC30A9 E2F8 ZNF143 ZNF263 SP3 FOSL1 FIBP DRAP1 RBM14 ENSG00000258297 KAT5 MUS81 SART1 SF3B2 RBM4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RELA on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the RELA gene promoter:
  • AP-1
  • p300
  • STAT3
  • Sp1
  • c-Jun
  • ATF-2
  • HEN1

Genomic Locations for RELA Gene

Genomic Locations for RELA Gene
chr11:65,653,596-65,663,094
(GRCh38/hg38)
Size:
9,499 bases
Orientation:
Minus strand
chr11:65,421,067-65,430,565
(GRCh37/hg19)
Size:
9,499 bases
Orientation:
Minus strand

Genomic View for RELA Gene

Genes around RELA on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RELA Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RELA Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for RELA Gene

Proteins for RELA Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

  • Protein details for RELA Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q04206-TF65_HUMAN
    Recommended name:
    Transcription factor p65
    Protein Accession:
    Q04206
    Secondary Accessions:
    • Q6GTV1
    • Q6SLK1

    Protein attributes for RELA Gene

    Size:
    551 amino acids
    Molecular mass:
    60219 Da
    Quaternary structure:
    • Component of the NF-kappa-B p65-p50 complex. Component of the NF-kappa-B p65-c-Rel complex. Homodimer; component of the NF-kappa-B p65-p65 complex. Component of the NF-kappa-B p65-p52 complex. May interact with ETHE1. Binds AES and TLE1. Interacts with TP53BP2. Binds to and is phosphorylated by the activated form of either RPS6KA4 or RPS6KA5. Interacts with ING4 and this interaction may be indirect. Interacts with CARM1, USP48 and UNC5CL. Interacts with IRAK1BP1 (By similarity). Interacts with NFKBID (By similarity). Interacts with NFKBIA. Interacts with GSK3B. Interacts with NFKBIB (By similarity). Interacts with NFKBIE. Interacts with NFKBIZ. Interacts with EHMT1 (via ANK repeats) (By similarity). Part of a 70-90 kDa complex at least consisting of CHUK, IKBKB, NFKBIA, RELA, ELP1 and MAP3K14. Interacts with HDAC3; HDAC3 mediates the deacetylation of RELA. Interacts with HDAC1; the interaction requires non-phosphorylated RELA. Interacts with CBP; the interaction requires phosphorylated RELA. Interacts (phosphorylated at Thr-254) with PIN1; the interaction inhibits p65 binding to NFKBIA. Interacts with SOCS1. Interacts with UXT. Interacts with MTDH and PHF11. Interacts with ARRB2. Interacts with human respiratory syncytial virus (HRSV) protein M2-1. Interacts with NFKBIA (when phosphorylated), the interaction is direct; phosphorylated NFKBIA is part of a SCF(BTRC)-like complex lacking CUL1. Interacts with RNF25. Interacts (via C-terminus) with DDX1. Interacts with UFL1 and COMMD1. Interacts with BRMS1; this promotes deacetylation of Lys-310. Interacts with NOTCH2 (By similarity). Directly interacts with MEN1; this interaction represses NFKB-mediated transactivation. Interacts with AKIP1, which promotes the phosphorylation and nuclear retention of RELA. Interacts (via the RHD) with GFI1; the interaction, after bacterial lipopolysaccharide (LPS) stimulation, inhibits the transcriptional activity by interfering with the DNA-binding activity to target gene promoter DNA. Interacts (when acetylated at Lys-310) with BRD4; leading to activation of the NF-kappa-B pathway. Interacts with MEFV. Interacts with CLOCK (By similarity). Interacts (via N-terminus) with CPEN1; this interaction induces proteolytic cleavage of p65/RELA subunit and inhibition of NF-kappa-B transcriptional activity (PubMed:18212740). Interacts with FOXP3. Interacts with CDK5RAP3; stimulates the interaction of RELA with HDAC1, HDAC2 and HDAC3 thereby inhibiting NF-kappa-B transcriptional activity (PubMed:17785205). Interacts with DHX9; this interaction is direct and activates NF-kappa-B-mediated transcription (PubMed:15355351). Interacts with LRRC25 (PubMed:29044191). Interacts with TBX21 (By similarity). Interacts with KAT2A (By similarity).

    Three dimensional structures from OCA and Proteopedia for RELA Gene

    Alternative splice isoforms for RELA Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for RELA Gene

Protein Expression for RELA Gene

See protein expression from ProteomicsDB, MOPED, PaxDb, and MaxQB

Post-translational modifications for RELA Gene

  • Ubiquitinated, leading to its proteasomal degradation. Degradation is required for termination of NF-kappa-B response.
  • Monomethylated at Lys-310 by SETD6. Monomethylation at Lys-310 is recognized by the ANK repeats of EHMT1 and promotes the formation of repressed chromatin at target genes, leading to down-regulation of NF-kappa-B transcription factor activity. Phosphorylation at Ser-311 disrupts the interaction with EHMT1 without preventing monomethylation at Lys-310 and relieves the repression of target genes (By similarity).
  • Phosphorylation at Ser-311 disrupts the interaction with EHMT1 and promotes transcription factor activity (By similarity). Phosphorylation on Ser-536 stimulates acetylation on Lys-310 and interaction with CBP; the phosphorylated and acetylated forms show enhanced transcriptional activity. Phosphorylation at Ser-276 by RPS6KA4 and RPS6KA5 promotes its transactivation and transcriptional activities.
  • Reversibly acetylated; the acetylation seems to be mediated by CBP, the deacetylation by HDAC3 and SIRT2. Acetylation at Lys-122 enhances DNA binding and impairs association with NFKBIA. Acetylation at Lys-310 is required for full transcriptional activity in the absence of effects on DNA binding and NFKBIA association. Acetylation at Lys-310 promotes interaction with BRD4. Acetylation can also lower DNA-binding and results in nuclear export. Interaction with BRMS1 promotes deacetylation of Lys-310. Lys-310 is deacetylated by SIRT2.
  • S-nitrosylation of Cys-38 inactivates the enzyme activity.
  • Sulfhydration at Cys-38 mediates the anti-apoptotic activity by promoting the interaction with RPS3 and activating the transcription factor activity.
  • Sumoylation by PIAS3 negatively regulates DNA-bound activated NF-kappa-B.
  • Proteolytically cleaved within a conserved N-terminus region required for base-specific contact with DNA in a CPEN1-mediated manner, and hence inhibits NF-kappa-B transcriptional activity (PubMed:18212740).
  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for RELA Gene

ENSEMBL proteins:
REFSEQ proteins:

Antibody Products

No data available for DME Specific Peptides for RELA Gene

Domains & Families for RELA Gene

Gene Families for RELA Gene

HGNC:
Human Protein Atlas (HPA):
  • Cancer-related genes
  • Disease related genes
  • Predicted intracellular proteins
  • Transcription factors

Protein Domains for RELA Gene

InterPro:
Blocks:
ProtoNet:

Suggested Antigen Peptide Sequences for RELA Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q04206

UniProtKB/Swiss-Prot:

TF65_HUMAN :
  • the 9aaTAD motif is a transactivation domain present in a large number of yeast and animal transcription factors.
Domain:
  • the 9aaTAD motif is a transactivation domain present in a large number of yeast and animal transcription factors.
genes like me logo Genes that share domains with RELA: view

Function for RELA Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Molecular function for RELA Gene

UniProtKB/Swiss-Prot Function:
NF-kappa-B is a pleiotropic transcription factor present in almost all cell types and is the endpoint of a series of signal transduction events that are initiated by a vast array of stimuli related to many biological processes such as inflammation, immunity, differentiation, cell growth, tumorigenesis and apoptosis. NF-kappa-B is a homo- or heterodimeric complex formed by the Rel-like domain-containing proteins RELA/p65, RELB, NFKB1/p105, NFKB1/p50, REL and NFKB2/p52 and the heterodimeric p65-p50 complex appears to be most abundant one. The dimers bind at kappa-B sites in the DNA of their target genes and the individual dimers have distinct preferences for different kappa-B sites that they can bind with distinguishable affinity and specificity. Different dimer combinations act as transcriptional activators or repressors, respectively. NF-kappa-B is controlled by various mechanisms of post-translational modification and subcellular compartmentalization as well as by interactions with other cofactors or corepressors. NF-kappa-B complexes are held in the cytoplasm in an inactive state complexed with members of the NF-kappa-B inhibitor (I-kappa-B) family. In a conventional activation pathway, I-kappa-B is phosphorylated by I-kappa-B kinases (IKKs) in response to different activators, subsequently degraded thus liberating the active NF-kappa-B complex which translocates to the nucleus. NF-kappa-B heterodimeric p65-p50 and p65-c-Rel complexes are transcriptional activators. The NF-kappa-B p65-p65 complex appears to be involved in invasin-mediated activation of IL-8 expression. The inhibitory effect of I-kappa-B upon NF-kappa-B the cytoplasm is exerted primarily through the interaction with p65. p65 shows a weak DNA-binding site which could contribute directly to DNA binding in the NF-kappa-B complex. Associates with chromatin at the NF-kappa-B promoter region via association with DDX1. Essential for cytokine gene expression in T-cells (PubMed:15790681).
GENATLAS Biochemistry:
nuclear transcription factor of kappa light chain enhancer in B cells,3 (p65),NF-kappa B/REL family

Phenotypes From GWAS Catalog for RELA Gene

Gene Ontology (GO) - Molecular Function for RELA Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding IMP 18045535
GO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IDA 17350185
GO:0000980 RNA polymerase II distal enhancer sequence-specific DNA binding IDA 1406630
GO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding NAS 19274049
GO:0000983 transcription factor activity, RNA polymerase II core promoter sequence-specific DNA binding IMP 26268439
genes like me logo Genes that share ontologies with RELA: view
genes like me logo Genes that share phenotypes with RELA: view

Animal Models for RELA Gene

MGI Knock Outs for RELA:

Animal Model Products

Transcription Factor Targets for RELA Gene

Selected GeneGlobe predicted Target genes for RELA
Targeted motifs for RELA Gene
HOMER Transcription Factor Regulatory Elements motif RELA
  • Consensus sequence: AGGGGATTTCCC Submotif: canonical Cell Type: GM12787 GEO ID: GSE19485

Clone Products

  • Addgene plasmids for RELA

No data available for Enzyme Numbers (IUBMB) and Human Phenotype Ontology for RELA Gene

Localization for RELA Gene

Subcellular locations from UniProtKB/Swiss-Prot for RELA Gene

Nucleus. Cytoplasm. Note=Colocalized with DDX1 in the nucleus upon TNF-alpha induction (By similarity). Nuclear, but also found in the cytoplasm in an inactive form complexed to an inhibitor (I-kappa-B). Colocalizes with GFI1 in the nucleus after LPS stimulation. {ECO:0000250}.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for RELA gene
Compartment Confidence
nucleus 5
cytosol 5
extracellular 2
plasma membrane 1
cytoskeleton 1
mitochondrion 1

Subcellular locations from the

Human Protein Atlas (HPA)
  • Cytosol (4)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for RELA Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000790 nuclear chromatin IDA 26268439
GO:0005634 nucleus IEA,IMP 9425125
GO:0005654 nucleoplasm TAS --
GO:0005667 transcription factor complex IDA 12048232
GO:0005730 NOT nucleolus IDA 21343177
genes like me logo Genes that share ontologies with RELA: view

Pathways & Interactions for RELA Gene

SuperPathways for RELA Gene

PathCards logo More details on SuperPathways for RELA
SuperPathway Contained pathways
1 Activated TLR4 signalling
Toll Like Receptor 9 (TLR9) Cascade
.94
TRAF6 mediated induction of NFkB and MAP kinases upon TLR7/8 or 9 activation
.94
Activated TLR4 signalling
.91
Toll Like Receptor 4 (TLR4) Cascade
.91
MyD88 cascade initiated on plasma membrane
.88
Toll Like Receptor 10 (TLR10) Cascade
.88
Toll Like Receptor 5 (TLR5) Cascade
.88
MyD88 dependent cascade initiated on endosome
.86
Toll Like Receptor 7/8 (TLR7/8) Cascade
.86
MyD88-independent TLR3/TLR4 cascade
.86
Toll Like Receptor 3 (TLR3) Cascade
.86
TRIF-mediated TLR3/TLR4 signaling
.86
MyD88-Mal cascade initiated on plasma membrane
.85
Toll Like Receptor 2 (TLR2) Cascade
.85
Toll Like Receptor TLR1-TLR2 Cascade
.85
Toll Like Receptor TLR6-TLR2 Cascade
.85
Toll-Like Receptors Cascades
.82
2 Cytosolic sensors of pathogen-associated DNA
RIP-mediated NFkB activation via ZBP1
.84
ZBP1(DAI) mediated induction of type I IFNs
.84
TRAF6 mediated NF-kB activation
.53
TAK1 activates NFkB by phosphorylation and activation of IKKs complex
.47
Cytosolic sensors of pathogen-associated DNA
.36
DEx/H-box helicases activate type I IFN and inflammatory cytokines production
.01
IkBA variant leads to EDA-ID
.01
IKBKG deficiency causes anhidrotic ectodermal dysplasia with immunodeficiency (EDA-ID) (via TLR)
.01
3 Toll-like Receptor Signaling Pathway
Toll-like receptor signaling pathway
.92
Toll-like Receptor Signaling Pathway
.92
Regulation of toll-like receptor signaling pathway
.71
NOD-like Receptor Signaling Pathways
.39
Chagas disease (American trypanosomiasis)
.31
NOD-like receptor signaling pathway
.31
4 RIG-I/MDA5 mediated induction of IFN-alpha/beta pathways
RIG-I-like receptor signaling pathway
.72
RIG-I-like Receptor Signaling
.72
Virus Detection and Induction of Antiviral Signaling Pathways by RIG-I-like Receptors (RLR)
.48
RIG-I/MDA5 mediated induction of IFN-alpha/beta pathways
.47
Cytosolic DNA-sensing pathway
.35
Immune response TLR3 and TLR4 induce TICAM1-specific signaling pathway
.33
5 Immune response IL-23 signaling pathway
Development PDGF signaling via STATs and NF-kB
.44
Immune response IL-23 signaling pathway
.44
Development Angiopoietin - Tie2 signaling
.38
IL23-mediated signaling events
.35
Rac1/Pak1/p38/MMP-2 pathway
.35
Angiopoietin receptor Tie2-mediated signaling
.33
genes like me logo Genes that share pathways with RELA: view

Pathways by source for RELA Gene

1 GeneTex pathway for RELA Gene
2 Tocris pathways for RELA Gene
2 Cell Signaling Technology pathways for RELA Gene

Interacting Proteins for RELA Gene

STRING Interaction Network Preview (showing 5 interactants - click image to see 25)
http://version10.5.string-db.org/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000384273%0d%0a9606.ENSP00000216797%0d%0a9606.ENSP00000226574%0d%0a9606.ENSP00000314004%0d%0a9606.ENSP00000401399%0d%0a9606.ENSP00000274764%0d%0a
Selected Interacting proteins: Q04206-TF65_HUMAN ENSP00000384273 for RELA Gene via UniProtKB MINT STRING IID

Symbol External ID(s) Details