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Aliases for REG1CP Gene

Subcategory (RNA class) for REG1CP Gene

lncRNA

Aliases for REG1CP Gene

  • Regenerating Family Member 1 Gamma, Pseudogene 2 3 5
  • Regenerating Islet-Derived 1 Pseudogene 2 3
  • Rat Regenerating Islet-Derived-Like, Human Homolog (Pancreatic Stone Protein-Like, Pancreatic Thread Protein-Like) 2
  • Regenerating Islet-Derived-Like, Human Homolog (Pancreatic Stone Protein-Like, Pancreatic Thread Protein-Like) 3
  • Regenerating Islet-Derived-Like, Pancreatic Stone Protein-Like, Pancreatic Thread Protein-Like (Rat) 2
  • Regenerating Islet-Derived-Like, Pancreatic Stone Protein-Like, Pancreatic Thread Protein-Like 3
  • REG1P 3
  • REGL 3
  • RS 3

External Ids for REG1CP Gene

ORGUL Members for REG1CP Gene

Previous HGNC Symbols for REG1CP Gene

  • REGL
  • REG1P

Summaries for REG1CP Gene

GeneCards Summary for REG1CP Gene

REG1CP (Regenerating Family Member 1 Gamma, Pseudogene) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for REG1CP Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for REG1CP Gene

Genomics for REG1CP Gene

GeneHancer (GH) Regulatory Elements for REG1CP Gene

Promoters and enhancers for REG1CP Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02I079120 Promoter 0.5 EPDnew 0.4 +17.7 17657 0.1 REG1A REG1CP GC02P079100
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around REG1CP on UCSC Golden Path with GeneCards custom track

Genomic Locations for REG1CP Gene

Genomic Locations for REG1CP Gene
chr2:79,135,503-79,138,427
(GRCh38/hg38)
Size:
2,925 bases
Orientation:
Minus strand
chr2:79,362,629-79,365,553
(GRCh37/hg19)

Genomic View for REG1CP Gene

Genes around REG1CP on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
REG1CP Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for REG1CP Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for REG1CP Gene

Proteins for REG1CP Gene

Post-translational modifications for REG1CP Gene

No Post-translational modifications

No data available for DME Specific Peptides for REG1CP Gene

Domains & Families for REG1CP Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for REG1CP Gene

Function for REG1CP Gene

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for REG1CP Gene

Localization for REG1CP Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for REG1CP Gene

Pathways & Interactions for REG1CP Gene

SuperPathways for REG1CP Gene

No Data Available

Interacting Proteins for REG1CP Gene

Gene Ontology (GO) - Biological Process for REG1CP Gene

None

No data available for Pathways by source and SIGNOR curated interactions for REG1CP Gene

Drugs & Compounds for REG1CP Gene

No Compound Related Data Available

Transcripts for REG1CP Gene

mRNA/cDNA for REG1CP Gene

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for REG1CP Gene

No ASD Table

Relevant External Links for REG1CP Gene

GeneLoc Exon Structure for
REG1CP
ECgene alternative splicing isoforms for
REG1CP

Expression for REG1CP Gene

NURSA nuclear receptor signaling pathways regulating expression of REG1CP Gene:

REG1CP
No Expression Related Data Available

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for REG1CP Gene

Orthologs for REG1CP Gene

Evolution for REG1CP Gene

ENSEMBL:
Gene Tree for REG1CP (if available)
TreeFam:
Gene Tree for REG1CP (if available)

No data available for Orthologs for REG1CP Gene

Paralogs for REG1CP Gene

No data available for Paralogs for REG1CP Gene

Variants for REG1CP Gene

Sequence variations from dbSNP and Humsavar for REG1CP Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000550742 -- 79,138,074(-) T/C non_coding_transcript_variant
rs1000822127 -- 79,138,537(-) T/C upstream_transcript_variant
rs1000853109 -- 79,138,250(-) T/C non_coding_transcript_variant
rs1001487160 -- 79,136,047(-) G/A non_coding_transcript_variant
rs1002048302 -- 79,135,888(-) C/G non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for REG1CP Gene

Variant ID Type Subtype PubMed ID
nsv522260 CNV gain 19592680
esv3892770 CNV gain 25118596
esv3591406 CNV loss 21293372
esv3584761 CNV loss 24956385
esv2661607 CNV deletion 23128226

Additional Variant Information for REG1CP Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
REG1CP

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for REG1CP Gene

Disorders for REG1CP Gene

No disorders were found for REG1CP Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for REG1CP Gene

Publications for REG1CP Gene

  1. Human regeneration protein/lithostathine genes map to chromosome 2p12. (PMID: 8333731) Gharib B … Berge-lefranc JL (Annals of human genetics 1993) 2 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  3. Molecular cloning, expression and chromosomal localization of a novel human REG family gene, REG III. (PMID: 15556304) Nata K … Okamoto H (Gene 2004) 3 58
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58
  5. Human REG family genes are tandemly ordered in a 95-kilobase region of chromosome 2p12. (PMID: 8549770) Miyashita H … Okamoto H (FEBS letters 1995) 3 58

Products for REG1CP Gene

Sources for REG1CP Gene

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