RDM1P5 Gene (Pseudogene)

RDM1 Pseudogene 5

GC17P039175
GIFtS:
6
See more...

Aliases for RDM1P5 Gene

Aliases for RDM1P5 Gene

  • RDM1 Pseudogene 5 2 3 5
  • RAD52 Motif Containing 1 Pseudogene 3
  • RAD52 Motif 1 Pseudogene 3
  • RDM1P5 5

External Ids for RDM1P5 Gene

Previous GeneCards Identifiers for RDM1P5 Gene

  • GC17P039141
  • GC17P039143
  • GC17P039144
  • GC17P039157
  • GC17P039135

Summaries for RDM1P5 Gene

GeneCards Summary for RDM1P5 Gene

RDM1P5 (RDM1 Pseudogene 5) is a Pseudogene.

Additional gene information for RDM1P5 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RDM1P5 Gene

Genomics for RDM1P5 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for RDM1P5 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH17J039056 Promoter/Enhancer 1.6 Ensembl ENCODE CraniofacialAtlas 621.5 +0.3 263 1.8 PRDM10 BACH1 ZNF143 POLR2A PATZ1 SP1 ZNF501 HDAC1 ZNF341 PKNOX1 RDM1P5 lnc-LINC00672-5 PLXDC1 ARL5C LINC00672 lnc-ARL5C-9 FBXO47
GH17J039057 Enhancer 0.3 Ensembl 600.7 -1.9 -1918 0.2 BCL6B RDM1P5 lnc-LINC00672-5 PLXDC1 ENSG00000266048 FBXO47
GH17J039074 Enhancer 0.6 Ensembl ENCODE 20 +17.0 16950 0.7 SCRT2 ZFHX2 GLIS1 EGR2 CBFA2T3 PLXDC1 RDM1P5 lnc-ARL5C-9 lnc-LINC00672-5 FBXO47
GH17J039067 Enhancer 0.3 Ensembl 21.2 +10.5 10481 0.6 NR4A1 PLXDC1 LRRC37A11P RDM1P5 LINC00672 lnc-ARL5C-9 lnc-LINC00672-5 FBXO47
GH17J039084 Enhancer 0.4 Ensembl 7.5 +27.6 27625 0.5 POLR2A TAL1 SMARCA4 CBFA2T3 PLXDC1 RDM1P5 ENSG00000286443 RF00017-2370 FBXO47
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RDM1P5 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RDM1P5 Gene

Genomic Locations for RDM1P5 Gene
chr17:39,057,019-39,113,190
(GRCh38/hg38)
Size:
56,172 bases
Orientation:
Plus strand
chr17:37,213,272-37,269,443
(GRCh37/hg19)
Size:
56,172 bases
Orientation:
Plus strand

Genomic View for RDM1P5 Gene

Genes around RDM1P5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RDM1P5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RDM1P5 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for RDM1P5 Gene

Proteins for RDM1P5 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for RDM1P5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RDM1P5 Gene

Domains & Families for RDM1P5 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RDM1P5 Gene

Function for RDM1P5 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for RDM1P5 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RDM1P5 Gene

Localization for RDM1P5 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RDM1P5 Gene

Pathways & Interactions for RDM1P5 Gene

PathCards logo

SuperPathways for RDM1P5 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RDM1P5 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RDM1P5 Gene

Drugs & Compounds for RDM1P5 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for RDM1P5 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for RDM1P5 Gene

3 NCBI additional mRNA sequence :
4 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RDM1P5 Gene

No ASD Table

Relevant External Links for RDM1P5 Gene

GeneLoc Exon Structure for
RDM1P5

Expression for RDM1P5 Gene

Products:

  1. Primer

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for RDM1P5

SOURCE GeneReport for Unigene cluster for RDM1P5 Gene:

Hs.676510
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RDM1P5 Gene

Orthologs for RDM1P5 Gene

Evolution for RDM1P5 Gene

ENSEMBL:
Gene Tree for RDM1P5 (if available)
TreeFam:
Gene Tree for RDM1P5 (if available)

No data available for Orthologs for RDM1P5 Gene

Paralogs for RDM1P5 Gene

No data available for Paralogs for RDM1P5 Gene

Variants for RDM1P5 Gene

Structural Variations from Database of Genomic Variants (DGV) for RDM1P5 Gene

Variant ID Type Subtype PubMed ID
esv3640537 CNV loss 21293372
nsv1146669 OTHER inversion 26484159
nsv2046 CNV deletion 18451855
nsv833440 CNV loss 17160897

Additional Variant Information for RDM1P5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RDM1P5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) and Variation tolerance for RDM1P5 Gene

Disorders for RDM1P5 Gene

Additional Disease Information for RDM1P5

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for RDM1P5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RDM1P5 Gene

Publications for RDM1P5 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for RDM1P5 Gene

Products for RDM1P5 Gene

Sources for RDM1P5 Gene