Aliases for RCAN3AS Gene

Subcategory (RNA class) for RCAN3AS Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for RCAN3AS Gene

  • RCAN3 Antisense RNA 2 3 5
  • RCAN3AS 2 170
  • RCAN3 Antisense Isoform 1,2a,3 13
  • RCAN3 Antisense Isoform 1,2b,3 13
  • RCAN3 Antisense Isoform 1,2,3 13
  • RCAN3 Antisense Isoform 1,3 13
  • RCAN3 Antisense 2
  • TCONS_00001428 3
  • HSALNG0001716 169
  • NONHSAG000698 94
  • HCG1812040 13

External Ids for RCAN3AS Gene

Previous GeneCards Identifiers for RCAN3AS Gene

  • GC01U903302

Summaries for RCAN3AS Gene

GeneCards Summary for RCAN3AS Gene

RCAN3AS (RCAN3 Antisense RNA) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for RCAN3AS Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RCAN3AS Gene

Genomics for RCAN3AS Gene

GeneHancer (GH) Regulatory Elements for RCAN3AS Gene

Promoters and enhancers for RCAN3AS Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J024534 Promoter/Enhancer 1.3 Ensembl ENCODE dbSUPER 750.6 -1.2 -1162 3.5 ETV6 RELA L3MBTL2 ZNF652 SP7 CREM EGR1 IKZF1 ATF1 IKZF2 RCAN3AS RCAN3 NIPAL3 TMEM50A lnc-NCMAP-1
GH01J024501 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.3 +30.3 30317 7.9 RBPJ SMARCE1 POLR2A CREB1 ZNF362 ELF1 HLF ZNF121 ELF3 ZNF384 RCAN3 NCMAP NIPAL3 STPG1 GRHL3 RUNX3 SRRM1 lnc-STPG1-4 RCAN3AS
GH01J024527 Enhancer 0.7 FANTOM5 Ensembl dbSUPER 0.4 +6.0 6000 5.2 CTCF RAD21 NFIL3 lnc-STPG1-4 RCAN3 NIPAL3 NCMAP STPG1 RCAN3AS
GH01J024521 Enhancer 0.7 Ensembl dbSUPER 0.4 +11.6 11599 5.6 ZNF121 CEBPG RNF2 CEBPA SMARCA4 HNF4A RCAN3 NCMAP NIPAL3 ENSG00000264443 lnc-STPG1-4 RCAN3AS
GH01J024515 Enhancer 0.7 ENCODE 0.4 +19.6 19634 0.2 SMARCE1 TCF7L2 MNT SMARCA4 FOSL2 DPF2 CREB1 CTBP1 JUND NFE2 NCMAP lnc-STPG1-4 RCAN3 RCAN3AS
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RCAN3AS on UCSC Golden Path with GeneCards custom track

Genomic Locations for RCAN3AS Gene

Genomic Locations for RCAN3AS Gene
chr1:24,495,930-24,535,400
(GRCh38/hg38)
Size:
39,471 bases
Orientation:
Minus strand

Genomic View for RCAN3AS Gene

Genes around RCAN3AS on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RCAN3AS Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RCAN3AS Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RCAN3AS Gene

Proteins for RCAN3AS Gene

  • Protein details for RCAN3AS Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    E3W6F2-E3W6F2_HUMAN
    Recommended name:
    HCG1812040
    Protein Accession:
    E3W6F2

    Protein attributes for RCAN3AS Gene

    Size:
    56 amino acids
    Molecular mass:
    6356 Da
    Quaternary structure:
    No Data Available

neXtProt entry for RCAN3AS Gene

Post-translational modifications for RCAN3AS Gene

No Post-translational modifications

No data available for DME Specific Peptides for RCAN3AS Gene

Domains & Families for RCAN3AS Gene

Protein Domains for RCAN3AS Gene

ProtoNet:

Suggested Antigen Peptide Sequences for RCAN3AS Gene

GenScript: Design optimal peptide antigens:
  • RCAN3 antisense isoform 1,3 (E3W6F2_HUMAN)
genes like me logo Genes that share domains with RCAN3AS: view

No data available for Gene Families , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RCAN3AS Gene

Function for RCAN3AS Gene

Phenotypes From GWAS Catalog for RCAN3AS Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RCAN3AS Gene

Localization for RCAN3AS Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RCAN3AS Gene

Pathways & Interactions for RCAN3AS Gene

PathCards logo

SuperPathways for RCAN3AS Gene

No Data Available

Gene Ontology (GO) - Biological Process for RCAN3AS Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RCAN3AS Gene

Drugs & Compounds for RCAN3AS Gene

No Compound Related Data Available

Transcripts for RCAN3AS Gene

mRNA/cDNA for RCAN3AS Gene

(4) REFSEQ mRNAs :
(7) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(6) NONCODE transcripts :
(22) RNACentral transcripts :
(4) LncBook transcripts :
(12) LNCipedia transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for RCAN3AS Gene

No ASD Table

Relevant External Links for RCAN3AS Gene

GeneLoc Exon Structure for
RCAN3AS
ECgene alternative splicing isoforms for
RCAN3AS

Expression for RCAN3AS Gene

NURSA nuclear receptor signaling pathways regulating expression of RCAN3AS Gene:

RCAN3AS

SOURCE GeneReport for Unigene cluster for RCAN3AS Gene:

Hs.399958
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RCAN3AS Gene

Orthologs for RCAN3AS Gene

Evolution for RCAN3AS Gene

ENSEMBL:
Gene Tree for RCAN3AS (if available)
TreeFam:
Gene Tree for RCAN3AS (if available)

No data available for Orthologs for RCAN3AS Gene

Paralogs for RCAN3AS Gene

No data available for Paralogs for RCAN3AS Gene

Variants for RCAN3AS Gene

Sequence variations from dbSNP and Humsavar for RCAN3AS Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000601409 -- 24,499,206(-) G/C/T intron_variant
rs1000655164 -- 24,499,480(-) G/C intron_variant
rs1001103325 -- 24,503,006(-) G/C upstream_transcript_variant
rs1001266761 -- 24,496,309(-) T/C non_coding_transcript_variant
rs1001492203 -- 24,501,455(-) G/C intron_variant

Additional Variant Information for RCAN3AS Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RCAN3AS

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RCAN3AS Gene

Disorders for RCAN3AS Gene

Additional Disease Information for RCAN3AS

No disorders were found for RCAN3AS Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RCAN3AS Gene

Publications for RCAN3AS Gene

  1. Complexity of bidirectional transcription and alternative splicing at human RCAN3 locus. (PMID: 21961037) Facchin F … Canaider S (PloS one 2011) 2 3 13 56
  2. Human RCAN3 gene expression and cell growth in endothelial cells. (PMID: 21042787) Canaider S … Perretti M (International journal of molecular medicine 2010) 2 56
  3. The sequence of the human genome. (PMID: 11181995) Venter JC … Zhu X (Science (New York, N.Y.) 2001) 13 56

Products for RCAN3AS Gene

Sources for RCAN3AS Gene