Aliases for RC3H1-IT1 Gene

Subcategory (RNA class) for RC3H1-IT1 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for RC3H1-IT1 Gene

  • RC3H1 Intronic Transcript 1 2 3 5
  • RC3H1 Intronic Transcript 1 (Non-Protein Coding) 2 3
  • RC3H1-IT1 2 170
  • HSALNG0008558 169
  • NONHSAG003512 94

External Ids for RC3H1-IT1 Gene

Previous GeneCards Identifiers for RC3H1-IT1 Gene

  • GC00U933582
  • GC01M173979

Summaries for RC3H1-IT1 Gene

GeneCards Summary for RC3H1-IT1 Gene

RC3H1-IT1 (RC3H1 Intronic Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for RC3H1-IT1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RC3H1-IT1 Gene

Genomics for RC3H1-IT1 Gene

GeneHancer (GH) Regulatory Elements for RC3H1-IT1 Gene

Promoters and enhancers for RC3H1-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J174019 Promoter 0.4 Ensembl 750.6 -1.1 -1060 0.2 ZSCAN16 RC3H1-IT1 RABGAP1L RNA5SP67 SERPINC1 CENPL DARS2 RC3H1
GH01J174021 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 0.6 -4.1 -4058 5 ZNF24 ZBTB40 LCORL SMARCE1 POLR2A CC2D1A NFYC ETV6 ELF1 L3MBTL2 LINC02776 RC3H1 CENPL ANKRD45 RNA5SP67 SERPINC1 DARS2 GAS5 RC3H1-IT1
GH01J174005 Enhancer 0.7 ENCODE 0.4 +12.4 12423 0.2 ETV6 RELA MAFK MLLT1 ZNF687 CREM ZBED1 IKZF1 BACH1 IKZF2 RC3H1-IT1 RC3H1 lnc-SERPINC1-6
GH01J174008 Promoter 0.3 Ensembl 0.4 +9.1 9140 0.2 RC3H1-IT1 RC3H1 lnc-SERPINC1-6
GH01J174015 Enhancer 0.2 FANTOM5 0.6 +2.5 2481 0.2 ZBTB37 SERPINC1 GAS5 SNORD81 RC3H1 GPR52 RC3H1-IT1 lnc-SERPINC1-6
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RC3H1-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RC3H1-IT1 Gene

Genomic Locations for RC3H1-IT1 Gene
chr1:174,009,267-174,017,641
(GRCh38/hg38)
Size:
8,375 bases
Orientation:
Minus strand
chr1:173,978,405-173,985,344
(GRCh37/hg19)
Size:
6,940 bases
Orientation:
Minus strand

Genomic View for RC3H1-IT1 Gene

Genes around RC3H1-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RC3H1-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RC3H1-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for RC3H1-IT1 Gene

Proteins for RC3H1-IT1 Gene

Post-translational modifications for RC3H1-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RC3H1-IT1 Gene

Domains & Families for RC3H1-IT1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RC3H1-IT1 Gene

Function for RC3H1-IT1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RC3H1-IT1 Gene

Localization for RC3H1-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RC3H1-IT1 Gene

Pathways & Interactions for RC3H1-IT1 Gene

PathCards logo

SuperPathways for RC3H1-IT1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RC3H1-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RC3H1-IT1 Gene

Drugs & Compounds for RC3H1-IT1 Gene

No Compound Related Data Available

Transcripts for RC3H1-IT1 Gene

mRNA/cDNA for RC3H1-IT1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) NONCODE transcripts :
(2) RNACentral transcripts :
(1) LncBook transcripts :
(2) LNCipedia transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for RC3H1-IT1 Gene

No ASD Table

Relevant External Links for RC3H1-IT1 Gene

GeneLoc Exon Structure for
RC3H1-IT1
ECgene alternative splicing isoforms for
RC3H1-IT1

Expression for RC3H1-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RC3H1-IT1 Gene

genes like me logo Genes that share expression patterns with RC3H1-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RC3H1-IT1 Gene

Orthologs for RC3H1-IT1 Gene

Evolution for RC3H1-IT1 Gene

ENSEMBL:
Gene Tree for RC3H1-IT1 (if available)
TreeFam:
Gene Tree for RC3H1-IT1 (if available)

No data available for Orthologs for RC3H1-IT1 Gene

Paralogs for RC3H1-IT1 Gene

No data available for Paralogs for RC3H1-IT1 Gene

Variants for RC3H1-IT1 Gene

Additional Variant Information for RC3H1-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RC3H1-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RC3H1-IT1 Gene

Disorders for RC3H1-IT1 Gene

No disorders were found for RC3H1-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RC3H1-IT1 Gene

Publications for RC3H1-IT1 Gene

  1. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. (PMID: 10737800) Dias Neto E … Simpson AJ (Proceedings of the National Academy of Sciences of the United States of America 2000) 3 56

Products for RC3H1-IT1 Gene

Sources for RC3H1-IT1 Gene