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Aliases for RBPMS-AS1 Gene

Subcategory (RNA class) for RBPMS-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for RBPMS-AS1 Gene

  • RBPMS Antisense RNA 1 2 3 5
  • CTD-3107M8.4 3

External Ids for RBPMS-AS1 Gene

Previous GeneCards Identifiers for RBPMS-AS1 Gene

  • GC08M030239

Summaries for RBPMS-AS1 Gene

GeneCards Summary for RBPMS-AS1 Gene

RBPMS-AS1 (RBPMS Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for RBPMS-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RBPMS-AS1 Gene

Genomics for RBPMS-AS1 Gene

GeneHancer (GH) Regulatory Elements for RBPMS-AS1 Gene

Promoters and enhancers for RBPMS-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08I030382 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 576.3 +0.1 65 5.4 FOXA2 ARID4B SIN3A DMAP1 GLI4 ZNF48 YY1 ZNF121 ZNF213 ZNF143 RBPMS-AS1 RBPMS UBXN8 SARAF
GH08I030419 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 17.4 -36.6 -36647 4.8 ATF1 FOXA2 ARNT SIN3A TCF12 GATA2 REST MEF2D RFX3 SMARCA4 RBPMS-AS1 RBPMS GTF2E2 MBOAT4 PIR31328
GH08I030383 Enhancer 1 ENCODE dbSUPER 27 +2.9 2921 0.2 PKNOX1 FOXA2 SIN3A DMAP1 RAD21 RFX5 ZNF335 ZSCAN5C ZNF143 MIXL1 RBPMS RBPMS-AS1 PIR39270
GH08I030410 Enhancer 1.3 Ensembl ENCODE dbSUPER 19.1 -29.2 -29175 7.7 ELF3 FOXA2 ZSCAN9 RAD21 ZBTB40 RARA YY1 RCOR1 FOS CREM RBPMS-AS1 RBPMS PPP2CB PPIAP84 PIR31328
GH08I030545 Enhancer 1.3 Ensembl ENCODE dbSUPER 17.1 -164.3 -164302 8.2 PKNOX1 FOXA2 ZFP64 ARID4B DMAP1 ZNF48 YY1 ATF7 RXRA SP5 PIR40668 RBPMS-AS1 RBPMS ENSG00000253112 RNU5A-3P GTF2E2 SMIM18 ENSG00000279041 PIR38894 PIR31328
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RBPMS-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RBPMS-AS1 Gene

Genomic Locations for RBPMS-AS1 Gene
3,283 bases
Minus strand

Genomic View for RBPMS-AS1 Gene

Genes around RBPMS-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RBPMS-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RBPMS-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RBPMS-AS1 Gene

Proteins for RBPMS-AS1 Gene

Post-translational modifications for RBPMS-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RBPMS-AS1 Gene

Domains & Families for RBPMS-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RBPMS-AS1 Gene

Function for RBPMS-AS1 Gene

Phenotypes From GWAS Catalog for RBPMS-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RBPMS-AS1 Gene

Localization for RBPMS-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RBPMS-AS1 Gene

Pathways & Interactions for RBPMS-AS1 Gene

SuperPathways for RBPMS-AS1 Gene

No Data Available

Interacting Proteins for RBPMS-AS1 Gene

Gene Ontology (GO) - Biological Process for RBPMS-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for RBPMS-AS1 Gene

Drugs & Compounds for RBPMS-AS1 Gene

No Compound Related Data Available

Transcripts for RBPMS-AS1 Gene

mRNA/cDNA for RBPMS-AS1 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RBPMS-AS1 Gene

No ASD Table

Relevant External Links for RBPMS-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for RBPMS-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RBPMS-AS1 Gene

genes like me logo Genes that share expression patterns with RBPMS-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RBPMS-AS1 Gene

Orthologs for RBPMS-AS1 Gene

Evolution for RBPMS-AS1 Gene

Gene Tree for RBPMS-AS1 (if available)
Gene Tree for RBPMS-AS1 (if available)

No data available for Orthologs for RBPMS-AS1 Gene

Paralogs for RBPMS-AS1 Gene

No data available for Paralogs for RBPMS-AS1 Gene

Variants for RBPMS-AS1 Gene

Sequence variations from dbSNP and Humsavar for RBPMS-AS1 Gene

SNP ID Clin Chr 08 pos Variation AA Info Type
rs1000315799 -- 30,385,572(-) C/T upstream_transcript_variant
rs1000594900 -- 30,387,041(-) T/G upstream_transcript_variant
rs1000825756 -- 30,387,194(-) C/T upstream_transcript_variant
rs1001270282 -- 30,384,081(-) T/A intron_variant
rs1001322586 -- 30,384,297(-) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for RBPMS-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv509260 CNV insertion 20534489
nsv526509 CNV gain 19592680

Additional Variant Information for RBPMS-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RBPMS-AS1 Gene

Disorders for RBPMS-AS1 Gene

Additional Disease Information for RBPMS-AS1

No disorders were found for RBPMS-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RBPMS-AS1 Gene

Publications for RBPMS-AS1 Gene

  1. Transcriptome analysis of human gastric cancer. (PMID: 16341674) Oh JH … Kim NS (Mammalian genome : official journal of the International Mammalian Genome Society 2005) 3 58

Products for RBPMS-AS1 Gene

Sources for RBPMS-AS1 Gene

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