Aliases for RBPMS-AS1 Gene

Subcategory (RNA class) for RBPMS-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for RBPMS-AS1 Gene

  • RBPMS Antisense RNA 1 2 3 5
  • RBPMS-AS1 2 5 165
  • NONHSAG049901.2 91
  • HSALNG0064364 164
  • CTD-3107M8.4 3

External Ids for RBPMS-AS1 Gene

Previous GeneCards Identifiers for RBPMS-AS1 Gene

  • GC08M030239
  • GC08M030382

Summaries for RBPMS-AS1 Gene

GeneCards Summary for RBPMS-AS1 Gene

RBPMS-AS1 (RBPMS Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for RBPMS-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RBPMS-AS1 Gene

Genomics for RBPMS-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs


GeneHancers around RBPMS-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RBPMS-AS1 Gene

Genomic Locations for RBPMS-AS1 Gene
chr8:30,375,390-30,385,402
(GRCh38/hg38)
Size:
10,013 bases
Orientation:
Minus strand
chr8:30,239,635-30,242,917
(GRCh37/hg19)
Size:
3,283 bases
Orientation:
Minus strand

Genomic View for RBPMS-AS1 Gene

Genes around RBPMS-AS1 on UCSC Golden Path with GeneCards custom track
RBPMS-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
RBPMS-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RBPMS-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RBPMS-AS1 Gene

Proteins for RBPMS-AS1 Gene

Post-translational modifications for RBPMS-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RBPMS-AS1 Gene

Domains & Families for RBPMS-AS1 Gene

Gene Families for RBPMS-AS1 Gene

genes like me logo Genes that share domains with RBPMS-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RBPMS-AS1 Gene

Function for RBPMS-AS1 Gene

Phenotypes From GWAS Catalog for RBPMS-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RBPMS-AS1 Gene

Localization for RBPMS-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RBPMS-AS1 Gene

Pathways & Interactions for RBPMS-AS1 Gene

PathCards logo

SuperPathways for RBPMS-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RBPMS-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RBPMS-AS1 Gene

Drugs & Compounds for RBPMS-AS1 Gene

No Compound Related Data Available

Transcripts for RBPMS-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for RBPMS-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000309C2D_9606 lncRNA 1031 4

Ensembl: ENST00000519753 (view in UCSC) ,

LncBook: HSALNT0134943,

LNCipedia: RBPMS-AS1:2,

NONCODE: NONHSAT125855.2,

URS000054D6A6_9606 lncRNA 909 4

Ensembl: ENST00000517521 (view in UCSC) ,

LncBook: HSALNT0134940,

LNCipedia: RBPMS-AS1:1,

NONCODE: NONHSAT125853.2,

URS000026BB54_9606 lncRNA 754 4

Ensembl: ENST00000523643 (view in UCSC) ,

LncBook: HSALNT0134942,

LNCipedia: RBPMS-AS1:4,

NONCODE: NONHSAT125854.2,

URS000075B634_9606 lncRNA 909 2

HGNC: 48721,

RefSeq: NR_046205,

URS0000EF2C4A_9606 lncRNA 767 1

Ensembl: ENST00000662163 (view in UCSC) ,

RBPMS-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for RBPMS-AS1 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for RBPMS-AS1 Gene

No ASD Table

Relevant External Links for RBPMS-AS1 Gene

GeneLoc Exon Structure for
RBPMS-AS1

Expression for RBPMS-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RBPMS-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for RBPMS-AS1

genes like me logo Genes that share expression patterns with RBPMS-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RBPMS-AS1 Gene

Orthologs for RBPMS-AS1 Gene

Evolution for RBPMS-AS1 Gene

ENSEMBL:
Gene Tree for RBPMS-AS1 (if available)
TreeFam:
Gene Tree for RBPMS-AS1 (if available)

No data available for Orthologs for RBPMS-AS1 Gene

Paralogs for RBPMS-AS1 Gene

No data available for Paralogs for RBPMS-AS1 Gene

Variants for RBPMS-AS1 Gene

Additional dbSNP identifiers (rs#s) for RBPMS-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for RBPMS-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv509260 CNV insertion 20534489
nsv526509 CNV gain 19592680

Additional Variant Information for RBPMS-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RBPMS-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for RBPMS-AS1 Gene

Disorders for RBPMS-AS1 Gene

No disorders were found for RBPMS-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RBPMS-AS1 Gene

Publications for RBPMS-AS1 Gene

  1. Transcriptome analysis of human gastric cancer. (PMID: 16341674) Oh JH … Kim NS (Mammalian genome : official journal of the International Mammalian Genome Society 2005) 3

Products for RBPMS-AS1 Gene

Sources for RBPMS-AS1 Gene