Aliases for RBFADN Gene

Subcategory (RNA class) for RBFADN Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for RBFADN Gene

  • RBFA Downstream Neighbor 2 3 5
  • RBFADN 2 5 165
  • RBFA Downstream Neighbor (Non-Protein Coding) 2 3
  • NONHSAG024262.2 91
  • HSALNG0122811 164

External Ids for RBFADN Gene

Previous GeneCards Identifiers for RBFADN Gene

  • GC18P077799
  • GC18P077808

Summaries for RBFADN Gene

GeneCards Summary for RBFADN Gene

RBFADN (RBFA Downstream Neighbor) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for RBFADN Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RBFADN Gene

Genomics for RBFADN Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RBFADN Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J080046 Promoter 0.3 EPDnew 600.7 -0.8 -760 0.1 RBFADN RBFA ADNP2 HSBP1L1 SLC66A2 ENSG00000267127
GH18J080032 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 58.4 -12.5 -12499 4 SP1 HNRNPL CREB1 CTCF TEAD4 TFE3 IKZF1 NFKBIZ ZNF692 POLR2A TXNL4A RBFA ENSG00000267127 lnc-PQLC1-1 RBFADN ENSG00000267251 ADNP2 HSBP1L1 SLC66A2
GH18J079959 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 28.1 -83.9 -83932 6.6 TEAD4 ZNF629 TFE3 LEF1 IKZF1 ZNF692 BACH1 GABPA PRDM1 ZNF143 HSBP1L1 ENSG00000287879 RBFADN RBFA PARD6G-AS1 TXNL4A SLC66A2 lnc-HSBP1L1-1
GH18J080147 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE CraniofacialAtlas 32.6 +101.2 101201 2.6 SP1 ZNF629 RFX1 POLR2A GABPA PKNOX1 PATZ1 TCF12 TRIM22 PBX2 PARD6G-AS1 RBFADN ADNP2 TXNL4A ENSG00000267127 ENSG00000278000 PARD6G
GH18J079986 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 29.2 -58.7 -58728 3.7 CREB1 ZNF629 TFE3 ZNF692 POLR2A BACH1 JUND LARP7 PKNOX1 RBFOX2 TXNL4A lnc-PQLC1-2 RBFADN ENSG00000267251 RBFA HSBP1L1 piR-48369-076
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RBFADN on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RBFADN Gene

Genomic Locations for RBFADN Gene
chr18:80,046,900-80,097,397
(GRCh38/hg38)
Size:
50,498 bases
Orientation:
Plus strand
chr18:77,806,900-77,853,362
(GRCh37/hg19)
Size:
46,463 bases
Orientation:
Plus strand

Genomic View for RBFADN Gene

Genes around RBFADN on UCSC Golden Path with GeneCards custom track
RBFADN in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
RBFADN Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RBFADN Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RBFADN Gene

Proteins for RBFADN Gene

Post-translational modifications for RBFADN Gene

No Post-translational modifications

No data available for DME Specific Peptides for RBFADN Gene

Domains & Families for RBFADN Gene

Gene Families for RBFADN Gene

genes like me logo Genes that share domains with RBFADN: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RBFADN Gene

Function for RBFADN Gene

Phenotypes From GWAS Catalog for RBFADN Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RBFADN Gene

Localization for RBFADN Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RBFADN Gene

Pathways & Interactions for RBFADN Gene

PathCards logo

SuperPathways for RBFADN Gene

No Data Available

Gene Ontology (GO) - Biological Process for RBFADN Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RBFADN Gene

Drugs & Compounds for RBFADN Gene

No Compound Related Data Available

Transcripts for RBFADN Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for RBFADN Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00007D3710_9606 lncRNA 5187 4

Ensembl: ENST00000568911 (view in UCSC) ,

LncBook: HSALNT0253881,

LNCipedia: RBFADN:8,

NONCODE: NONHSAT060078.2,

URS000075D449_9606 lncRNA 808 4

HGNC: 48591,

RefSeq: NR_103445,

LNCipedia: RBFADN:16,

NONCODE: NONHSAT178126.1,

URS00007D5BD4_9606 lncRNA 561 4

Ensembl: ENST00000564686 (view in UCSC) ,

LncBook: HSALNT0253882,

LNCipedia: RBFADN:9,

NONCODE: NONHSAT060079.2,

URS00007BE6D0_9606 lncRNA 1350 3

Ensembl: ENST00000562391 (view in UCSC) ,

LNCipedia: RBFADN:7,

NONCODE: NONHSAT060077.2,

URS00007CDF1F_9606 lncRNA 742 2

Ensembl: ENST00000566810 (view in UCSC) ,

LNCipedia: RBFADN:10,

RBFADN in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for RBFADN Gene

5 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for RBFADN Gene

No ASD Table

Relevant External Links for RBFADN Gene

GeneLoc Exon Structure for
RBFADN

Expression for RBFADN Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RBFADN Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for RBFADN

genes like me logo Genes that share expression patterns with RBFADN: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RBFADN Gene

Orthologs for RBFADN Gene

Evolution for RBFADN Gene

ENSEMBL:
Gene Tree for RBFADN (if available)
TreeFam:
Gene Tree for RBFADN (if available)

No data available for Orthologs for RBFADN Gene

Paralogs for RBFADN Gene

No data available for Paralogs for RBFADN Gene

Variants for RBFADN Gene

Additional dbSNP identifiers (rs#s) for RBFADN Gene

Structural Variations from Database of Genomic Variants (DGV) for RBFADN Gene

Variant ID Type Subtype PubMed ID
dgv3413n100 CNV gain 25217958
dgv6130n54 CNV loss 21841781
esv1134300 CNV insertion 17803354
esv1593592 CNV insertion 17803354
esv23876 CNV loss 19812545
esv29747 CNV loss 19812545
esv3445979 CNV duplication 20981092
esv3643326 CNV loss 21293372
nsv1061450 CNV gain 25217958
nsv1062512 CNV gain 25217958
nsv1065902 CNV gain 25217958
nsv1132885 CNV insertion 24896259
nsv1153247 CNV insertion 26484159
nsv428359 CNV gain 18775914
nsv470437 CNV loss 18288195
nsv577958 CNV gain 21841781
nsv577961 CNV gain+loss 21841781
nsv577962 CNV gain 21841781
nsv577963 CNV gain 21841781
nsv577964 CNV gain 21841781
nsv577969 CNV loss 21841781

Additional Variant Information for RBFADN Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RBFADN

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for RBFADN Gene

Disorders for RBFADN Gene

Additional Disease Information for RBFADN

No disorders were found for RBFADN Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RBFADN Gene

Publications for RBFADN Gene

  1. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R … Stanton LW (Nature biotechnology 2004) 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3
  3. Large-scale concatenation cDNA sequencing. (PMID: 9110174) Yu W … Gibbs RA (Genome research 1997) 3
  4. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3
  5. A "double adaptor" method for improved shotgun library construction. (PMID: 8619474) Andersson B … Gibbs RA (Analytical biochemistry 1996) 3

Products for RBFADN Gene

Sources for RBFADN Gene