RBBP8 Gene (Protein Coding)

RB Binding Protein 8, Endonuclease

GC18P022798
GIFtS:
45
The protein encoded by this gene is a ubiquitously expressed nuclear protein. It is found among several proteins that bind directly to retinoblastoma protein, which regulates cell proliferation. This protein complexes with transcriptional co-repressor CTBP. It is also associated with BRCA1 and is thought to modulate the functions of BRCA1 in transcriptional regulation, DNA repa... See more...

Aliases for RBBP8 Gene

Aliases for RBBP8 Gene

  • RB Binding Protein 8, Endonuclease 2 3 5
  • Sporulation In The Absence Of SPO11 Protein 2 Homolog 3 4
  • Retinoblastoma Binding Protein 8 2 3
  • Retinoblastoma-Binding Protein 8 2 4
  • CTBP-Interacting Protein 2 3
  • DNA Endonuclease RBBP8 3 4
  • RBBP-8 3 4
  • CTIP 3 4
  • SAE2 3 4
  • RIM 3 4
  • Retinoblastoma-Interacting Protein And Myosin-Like 4
  • CtBP-Interacting Protein 4
  • Seckel Syndrome 2 2
  • EC 3.1.-.- 4
  • SCKL2 3
  • COM1 3
  • JWDS 3
  • CtIP 4

External Ids for RBBP8 Gene

Previous HGNC Symbols for RBBP8 Gene

  • SCKL2

Previous GeneCards Identifiers for RBBP8 Gene

  • GC18P020402
  • GC18P020243
  • GC18P018765
  • GC18P018767
  • GC18P020513
  • GC18P017367
  • GC18P020378

Summaries for RBBP8 Gene

Entrez Gene Summary for RBBP8 Gene

  • The protein encoded by this gene is a ubiquitously expressed nuclear protein. It is found among several proteins that bind directly to retinoblastoma protein, which regulates cell proliferation. This protein complexes with transcriptional co-repressor CTBP. It is also associated with BRCA1 and is thought to modulate the functions of BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control. It is suggested that this gene may itself be a tumor suppressor acting in the same pathway as BRCA1. Three transcript variants encoding two different isoforms have been found for this gene. More transcript variants exist, but their full-length natures have not been determined. [provided by RefSeq, Jul 2008]

GeneCards Summary for RBBP8 Gene

RBBP8 (RB Binding Protein 8, Endonuclease) is a Protein Coding gene. Diseases associated with RBBP8 include Jawad Syndrome and Seckel Syndrome 2. Among its related pathways are DNA Double-Strand Break Repair and Gene Expression. Gene Ontology (GO) annotations related to this gene include damaged DNA binding. An important paralog of this gene is RBBP8NL.

UniProtKB/Swiss-Prot Summary for RBBP8 Gene

  • Endonuclease that cooperates with the MRE11-RAD50-NBN (MRN) complex in DNA-end resection, the first step of double-strand break (DSB) repair through the homologous recombination (HR) pathway. HR is restricted to S and G2 phases of the cell cycle and preferentially repairs DSBs resulting from replication fork collapse. Key determinant of DSB repair pathway choice, as it commits cells to HR by preventing classical non-homologous end-joining (NHEJ). Functions downstream of the MRN complex and ATM, promotes ATR activation and its recruitment to DSBs in the S/G2 phase facilitating the generation of ssDNA. Component of the BRCA1-RBBP8 complex that regulates CHEK1 activation and controls cell cycle G2/M checkpoints on DNA damage (PubMed:10764811, PubMed:10910365, PubMed:15485915, PubMed:16581787, PubMed:16818604, PubMed:17965729, PubMed:19202191, PubMed:19759395, PubMed:20064462, PubMed:20829486). During immunoglobulin heavy chain class-switch recombination, promotes microhomology-mediated alternative end joining (A-NHEJ) and plays an essential role in chromosomal translocations (By similarity).

Gene Wiki entry for RBBP8 Gene

Additional gene information for RBBP8 Gene

No data available for CIViC Summary , Tocris Summary , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RBBP8 Gene

Genomics for RBBP8 Gene

GeneHancer (GH) Regulatory Elements for RBBP8 Gene

Promoters and enhancers for RBBP8 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH18J022932 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 508.7 +135.5 135540 4.4 ZNF217 SIN3A NRF1 POLR2G USF1 GTF2E2 PHF8 ZFX ZIC2 POLR2A RBBP8 ENSG00000265943 MIR4741 ENSG00000266850 piR-33614-125
GH18J022798 Promoter/Enhancer 1.2 Ensembl ENCODE 507.6 +1.2 1182 3.7 CTCF REST RAD21 TRIM22 SMC3 NR2F2 DEK CEBPG CEBPB PBX2 RBBP8 lnc-CABLES1-7 ENSG00000266850 ENSG00000265943
GH18J022163 Promoter/Enhancer 2.9 VISTA EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 12.1 -616.8 -616771 36.4 EP300 HNRNPK CTCF ZSCAN5C NRF1 TCF12 POLR2G USF1 NCOR1 PHB2 GATA6 RF00026-473 RNU6-702P ESCO1 RBBP8 MIB1 SNRPD1 ENSG00000273348 ENSG00000264012 GATA6-AS1
GH18J022855 Enhancer 0.8 Ensembl ENCODE dbSUPER 19.1 +59.0 59039 3.4 TEAD4 FOS NR3C1 NANOG ESR1 ZNF770 SCRT2 MYC RBBP8 ENSG00000266850 lnc-CABLES1-5 lnc-CABLES1-4 ENSG00000265943
GH18J022489 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 9.8 -305.9 -305872 6.1 CTCF ZSCAN5C NCOR1 ZBTB10 AFF1 TRIM28 TARDBP REST RFX1 KLF7 ESCO1 MIB1 SNRPD1 RBBP8 MIR133A1HG lnc-GATA6-4 piR-45012-246
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RBBP8 on UCSC Golden Path with GeneCards custom track

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for RBBP8

Top Transcription factor binding sites by QIAGEN in the RBBP8 gene promoter:
  • Egr-3
  • FOXJ2 (long isoform)
  • Nkx2-2
  • Nkx2-5
  • SRF
  • SRF (504 AA)

Genomic Locations for RBBP8 Gene

Genomic Locations for RBBP8 Gene
chr18:22,798,261-23,026,488
(GRCh38/hg38)
Size:
228,228 bases
Orientation:
Plus strand
chr18:20,378,224-20,606,451
(GRCh37/hg19)
Size:
228,228 bases
Orientation:
Plus strand

Genomic View for RBBP8 Gene

Genes around RBBP8 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RBBP8 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RBBP8 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for RBBP8 Gene

Proteins for RBBP8 Gene

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  • Protein details for RBBP8 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q99708-CTIP_HUMAN
    Recommended name:
    DNA endonuclease RBBP8
    Protein Accession:
    Q99708
    Secondary Accessions:
    • A6NKN2
    • A8K8W6
    • E7ETY1
    • O75371
    • Q8NHQ3

    Protein attributes for RBBP8 Gene

    Size:
    897 amino acids
    Molecular mass:
    101942 Da
    Quaternary structure:
    • Homodimer; dimerizes via the coiled coil domain (PubMed:15084581). Interacts (via the PXDLS motif) with CTBP1; the interaction is disrupted via binding of the adenovirus E1A to CTBP1 (PubMed:9535825). Component of the BRCA1-RBBP8 complex. Interacts (the Ser-327 phosphorylated form) with BRCA1 (via the C-terminal BRCA1 domains): the interaction occurs in the G2 phase, ubiquitinates RBBP8 and involves RBBP8 in BRCA1-dependent G2/M checkpoint control on DNA damage (PubMed:10764811, PubMed:15485915, PubMed:16818604, PubMed:17965729, PubMed:23623683). Interacts with RB1 (PubMed:9721205). Interacts with the MRN complex. Interacts directly with MRE11; the interaction is required for efficient homologous recombination (HR) and regulation of the MRN complex (PubMed:19759395, PubMed:23623683). Interacts directly with RAD50 (PubMed:19759395). Interacts directly with NBN (PubMed:19759395). Interacts with SIRT6; the interaction deacetylates RBBP8 upon DNA damage (PubMed:20829486). Interacts with LM04 (via the LIM zinc-binding 1 domain) (PubMed:11751867). Interacts with SIAH1 (PubMed:14654780). Interacts with RNF138 (PubMed:26502057). Interacts with EXD2 (PubMed:26807646). Interacts with CUL3 and KLHL15; this interaction leads to RBBP8 proteasomal degradation (PubMed:27561354). Directly interacts with PIN1; this interaction depends upon RBBP8 phosphorylation, predominantly at Thr-315 (PubMed:23623683). Interacts with FZR1; this interaction leads to APC/C-mediated RBBP8 proteasomal degradation (PubMed:25349192). Interacts with AUNIP; leading to recruit RBBP8 to sites of DNA damage (PubMed:29042561, PubMed:10764811, PubMed:11751867, PubMed:14654780, PubMed:15084581, PubMed:15485915, PubMed:16818604, PubMed:17965729, PubMed:19759395, PubMed:20829486, PubMed:23623683, PubMed:25349192, PubMed:26502057, PubMed:26807646, PubMed:27561354, PubMed:9535825, PubMed:9721205). Interacts with SAMHD1 (PubMed:28834754).

    Three dimensional structures from OCA and Proteopedia for RBBP8 Gene

    Alternative splice isoforms for RBBP8 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for RBBP8 Gene

Protein Expression for RBBP8 Gene

See protein expression from ProteomicsDB, MOPED, PaxDb, and MaxQB

Post-translational modifications for RBBP8 Gene

  • Acetylated. Deacetylation by SIRT6 upon DNA damage promotes DNA end resection.
  • Hyperphosphorylation upon ionizing radiation results in dissociation from BRCA1. Phosphorylation at Thr-847 by CDK1 is essential for the recruitment to DNA and the DNA repair function. Phosphorylated on Ser-327 as cells enter G2 phase. This phosphorylation is required for binding BRCA1 and for the G2/M DNA damage transition checkpoint control. Phosphorylation at Thr-315, probably catalyzed by CDK2, is required for PIN1-binding, while phosphorylation at Ser-276 serves as a PIN1 isomerization site. Phosphorylation at Thr-315 is cell-cycle dependent. It steadily increases during S phase, peaks at late S/G2 phase, and drops at G1 (PubMed:23623683).
  • Ubiquitinated (PubMed:14654780, PubMed:16818604, PubMed:27561354). Ubiquitination at multiple sites by BRCA1 (via its N-terminal RING domain) does not lead to its proteasomal degradation but instead the ubiquitinated RBBP8 binds to chromatin following DNA damage and may play a role in G2/M checkpoint control (PubMed:16818604). Ubiquitinated by RNF138 at its N-terminus (PubMed:26502057). Ubiquitinated through 'Lys-48' by the E3 CUL3-KLHL15 complex; this modification leads to proteasomal degradation (PubMed:27561354). Ubiquitinated by the E3 FZR1/APC/C complex; this modification leads to proteasomal degradation (PubMed:25349192).
  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for RBBP8 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for RBBP8 Gene

Domains & Families for RBBP8 Gene

Gene Families for RBBP8 Gene

HGNC:
Human Protein Atlas (HPA):
  • Disease related genes
  • Plasma proteins
  • Predicted intracellular proteins

Protein Domains for RBBP8 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for RBBP8 Gene

GenScript: Design optimal peptide antigens:
  • Sporulation in the absence of SPO11 protein 2 homolog (COM1_HUMAN)
  • RBBP8 protein (Q8NHQ3_HUMAN)

Graphical View of Domain Structure for InterPro Entry

Q99708

UniProtKB/Swiss-Prot:

CTIP_HUMAN :
  • The PXDLS motif binds to a cleft in CtBP proteins.
  • Belongs to the COM1/SAE2/CtIP family.
Domain:
  • The PXDLS motif binds to a cleft in CtBP proteins.
  • The damage-recruitment motif is required for DNA binding and translocation to sites of DNA damage.
Family:
  • Belongs to the COM1/SAE2/CtIP family.
genes like me logo Genes that share domains with RBBP8: view

Function for RBBP8 Gene

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Molecular function for RBBP8 Gene

UniProtKB/Swiss-Prot Function:
Endonuclease that cooperates with the MRE11-RAD50-NBN (MRN) complex in DNA-end resection, the first step of double-strand break (DSB) repair through the homologous recombination (HR) pathway. HR is restricted to S and G2 phases of the cell cycle and preferentially repairs DSBs resulting from replication fork collapse. Key determinant of DSB repair pathway choice, as it commits cells to HR by preventing classical non-homologous end-joining (NHEJ). Functions downstream of the MRN complex and ATM, promotes ATR activation and its recruitment to DSBs in the S/G2 phase facilitating the generation of ssDNA. Component of the BRCA1-RBBP8 complex that regulates CHEK1 activation and controls cell cycle G2/M checkpoints on DNA damage (PubMed:10764811, PubMed:10910365, PubMed:15485915, PubMed:16581787, PubMed:16818604, PubMed:17965729, PubMed:19202191, PubMed:19759395, PubMed:20064462, PubMed:20829486). During immunoglobulin heavy chain class-switch recombination, promotes microhomology-mediated alternative end joining (A-NHEJ) and plays an essential role in chromosomal translocations (By similarity).
UniProtKB/Swiss-Prot Induction:
Expression is cell-cycle regulated. Levels increase as dividing cells traverse the G1/S boundary (PubMed:18171986). The protein is degraded by the proteasome pathway during mitotic exit. Also degraded in response to DNA damage in G2 cells; this degradation is mediated by the E3 FZR1/APC/C complex (PubMed:25349192).
GENATLAS Biochemistry:
retinoblastoma binding protein,ubiquitously expressed

Enzyme Numbers (IUBMB) for RBBP8 Gene

Phenotypes From GWAS Catalog for RBBP8 Gene

Gene Ontology (GO) - Molecular Function for RBBP8 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000014 single-stranded DNA endodeoxyribonuclease activity IMP 18716619
GO:0000403 Y-form DNA binding IBA 21873635
GO:0000406 double-strand/single-strand DNA junction binding IBA 21873635
GO:0001103 RNA polymerase II repressing transcription factor binding IPI 16287852
GO:0003677 DNA binding IEA --
genes like me logo Genes that share ontologies with RBBP8: view
genes like me logo Genes that share phenotypes with RBBP8: view

Human Phenotype Ontology for RBBP8 Gene

HPO Id HPO Name Alternative Ids Definition Synonyms

Animal Models for RBBP8 Gene

MGI Knock Outs for RBBP8:

Animal Model Products

Clone Products

  • Addgene plasmids for RBBP8

No data available for Transcription Factor Targets and HOMER Transcription for RBBP8 Gene

Localization for RBBP8 Gene

Subcellular locations from UniProtKB/Swiss-Prot for RBBP8 Gene

Nucleus. Chromosome. Note=Associates with sites of DNA damage in S/G2 phase (PubMed:10764811, PubMed:25349192). Ubiquitinated RBBP8 binds to chromatin following DNA damage (PubMed:16818604). {ECO:0000269 PubMed:10764811, ECO:0000269 PubMed:16818604, ECO:0000269 PubMed:25349192}.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for RBBP8 gene
Compartment Confidence
nucleus 5
cytoskeleton 2
cytosol 2
plasma membrane 1
extracellular 1
mitochondrion 1
endoplasmic reticulum 1
lysosome 1

Subcellular locations from the

Human Protein Atlas (HPA)
  • Nucleoplasm (3)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for RBBP8 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus TAS,IEA 10764811
GO:0005654 nucleoplasm IDA,TAS --
GO:0005694 chromosome IEA --
GO:0017053 transcriptional repressor complex IDA 16287852
GO:0035861 site of double-strand break IBA 21873635
genes like me logo Genes that share ontologies with RBBP8: view

Pathways & Interactions for RBBP8 Gene

genes like me logo Genes that share pathways with RBBP8: view

Pathways by source for RBBP8 Gene

1 KEGG pathway for RBBP8 Gene
1 Qiagen pathway for RBBP8 Gene
  • BRCA1 Pathway
1 Cell Signaling Technology pathway for RBBP8 Gene
1 GeneTex pathway for RBBP8 Gene

SIGNOR curated interactions for RBBP8 Gene

Activates:
Inactivates:
Is activated by:
Is inactivated by:

Gene Ontology (GO) - Biological Process for RBBP8 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000082 G1/S transition of mitotic cell cycle IEA --
GO:0000724 double-strand break repair via homologous recombination IEA,TAS --
GO:0000729 DNA double-strand break processing TAS --
GO:0001835 blastocyst hatching IEA --
GO:0006260 DNA replication TAS --
genes like me logo Genes that share ontologies with RBBP8: view

Drugs & Compounds for RBBP8 Gene

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(1) Additional Compounds for RBBP8 Gene - From: Novoseek

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
genes like me logo Genes that share compounds with RBBP8: view

Transcripts for RBBP8 Gene

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mRNA/cDNA for RBBP8 Gene

3 REFSEQ mRNAs :
8 NCBI additional mRNA sequence :
16 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Clone Products

  • Addgene plasmids for RBBP8

Alternative Splicing Database (ASD) splice patterns (SP) for RBBP8 Gene

ExUns: 1 ^ 2a · 2b · 2c · 2d ^ 3 ^ 4 ^ 5a · 5b ^ 6a · 6b ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13a · 13b ^ 14 ^ 15 ^ 16 ^ 17a · 17b ^ 18 ^ 19 ^
SP1: - - - - - - - -
SP2: - - - - - -
SP3: - - - - - -
SP4: - - -
SP5: - - -
SP6: -
SP7:

ExUns: 20 ^ 21a · 21b
SP1:
SP2:
SP3:
SP4:
SP5:
SP6:
SP7:

Relevant External Links for RBBP8 Gene

GeneLoc Exon Structure for
RBBP8

Expression for RBBP8 Gene

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mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RBBP8 Gene

mRNA expression in normal human tissues for RBBP8 Gene
mRNA expression by BioGPS for RBBP8 GenemRNA expression by GTEx for RBBP8 Gene

Protein differential expression in normal tissues from HIPED for RBBP8 Gene

This gene is overexpressed in Stomach (38.7), Heart (18.8), and Liver, secretome (11.4).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for RBBP8 Gene



Protein tissue co-expression partners for RBBP8 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for RBBP8

SOURCE GeneReport for Unigene cluster for RBBP8 Gene:

Hs.546282

mRNA Expression by UniProt/SwissProt for RBBP8 Gene:

Q99708-CTIP_HUMAN
Tissue specificity: Expressed in ER-positive breast cancer lines, but tends to be down-regulated ER-negative cells (at protein level).

Phenotype-based relationships between genes and organs from Gene ORGANizer for RBBP8 Gene

Germ Layers:
  • ectoderm
  • endoderm
  • mesoderm
Systems:
  • cardiovascular
  • digestive
  • immune
  • integumentary
  • lymphatic
  • nervous
  • reproductive
  • respiratory
  • skeletal muscle
  • skeleton
  • urinary
Regions:
Head and neck:
  • brain
  • cerebellum
  • cheek
  • chin
  • cranial nerve
  • ear
  • eye
  • eyelid
  • face
  • forehead
  • head
  • jaw
  • larynx
  • mandible
  • maxilla
  • mouth
  • neck
  • nose
  • outer ear
  • skull
  • tongue
  • tooth
  • vocal cord
Thorax:
  • chest wall
  • clavicle
  • heart
  • heart valve
  • lung
  • rib
  • rib cage
  • scapula
  • sternum
Abdomen:
  • kidney
Pelvis:
  • pelvis
  • penis
  • testicle
  • urethra
  • vagina
Limb:
  • ankle
  • arm
  • digit
  • elbow
  • femur
  • fibula
  • finger
  • foot
  • forearm
  • hand
  • hip
  • humerus
  • knee
  • lower limb
  • radius
  • shin
  • shoulder
  • thigh
  • tibia
  • toe
  • ulna
  • upper limb
  • wrist
General:
  • blood
  • bone marrow
  • coagulation system
  • hair
  • peripheral nervous system
  • red blood cell
  • skin
  • spinal column
  • spinal cord
  • vertebrae
  • white blood cell
genes like me logo Genes that share expression patterns with RBBP8: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and Evidence on tissue expression from TISSUES for RBBP8 Gene

Orthologs for RBBP8 Gene

This gene was present in the common ancestor of chordates.

Orthologs for RBBP8 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
 Mammalia RBBP8 31 30
  • 99.18 (n)
 OneToOne
oppossum
(Monodelphis domestica)
 Mammalia -- 31
  • 89 (a)
 OneToMany
-- 31
  • 67 (a)
 OneToMany
dog
(Canis familiaris)
 Mammalia RBBP8 31 30
  • 88.33 (n)
 OneToOne
cow
(Bos Taurus)
 Mammalia RBBP8 31 30
  • 87.04 (n)
 OneToOne
mouse
(Mus musculus)
 Mammalia Rbbp8 17 31 30
  • 84.08 (n)
rat
(Rattus norvegicus)
 Mammalia Rbbp8 30
  • 82.44 (n)
platypus
(Ornithorhynchus anatinus)
 Mammalia RBBP8 31
  • 79 (a)
 OneToOne
chicken
(Gallus gallus)
 Aves RBBP8 31 30
  • 66.52 (n)
 OneToOne
lizard
(Anolis carolinensis)
 Reptilia RBBP8 31
  • 52 (a)
 OneToOne
tropical clawed frog
(Silurana tropicalis)
 Amphibia rbbp8 30
  • 58.53 (n)
Str.7440 30
zebrafish
(Danio rerio)
 Actinopterygii rbbp8 31
  • 35 (a)
 OneToOne
Dr.21899 30
Species where no ortholog for RBBP8 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for RBBP8 Gene

ENSEMBL:
Gene Tree for RBBP8 (if available)
TreeFam:
Gene Tree for RBBP8 (if available)
Aminode:
Evolutionary constrained regions (ECRs) for RBBP8: view image

Paralogs for RBBP8 Gene

Paralogs for RBBP8 Gene

Pseudogenes.org Pseudogenes for RBBP8 Gene

genes like me logo Genes that share paralogs with RBBP8: view

Variants for RBBP8 Gene

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Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for RBBP8 Gene

SNP ID Clinical significance and condition Chr 18 pos Variation AA Info Type
669107 Benign: not provided 22,982,555(+) G/A INTRON_VARIANT
670487 Benign: not provided 22,988,974(+) G/A INTRON_VARIANT
673333 Benign: not provided 22,997,493(+) T/A INTRON_VARIANT
673936 Benign: not provided 22,975,256(+) T/C INTRON_VARIANT
673956 Benign: not provided 22,996,218(+) G/T INTRON_VARIANT

Additional dbSNP identifiers (rs#s) for RBBP8 Gene

Structural Variations from Database of Genomic Variants (DGV) for RBBP8 Gene

Variant ID Type Subtype PubMed ID
dgv1868e59 CNV tandem duplication 20981092
esv1450571 CNV insertion 17803354
esv2659320 CNV deletion 23128226
esv3443453 CNV duplication 20981092
esv3641965 CNV loss 21293372
nsv1056849 CNV gain 25217958
nsv1067209 CNV loss 25217958
nsv1117194 CNV tandem duplication 24896259
nsv131399 CNV insertion 16902084

Variation tolerance for RBBP8 Gene

Residual Variation Intolerance Score: 4.01% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.69; 32.24% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for RBBP8 Gene

Human Gene Mutation Database (HGMD)
RBBP8
SNPedia medical, phenotypic, and genealogical associations of SNPs for
RBBP8

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for RBBP8 Gene

Disorders for RBBP8 Gene

MalaCards: The human disease database

(22) MalaCards diseases for RBBP8 Gene - From: UniProtKB/Swiss-Prot, OMIM, ClinVar, GTR, Orphanet, DISEASES, Novoseek, and GeneCards

Disorder Aliases PubMed IDs
jawad syndrome
  • jwds
seckel syndrome 2
  • sckl2
seckel syndrome
  • sckl
retinoblastoma
  • rb1
microcephaly
  • microcephalus
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UniProtKB/Swiss-Prot

CTIP_HUMAN
  • Seckel syndrome 2 (SCKL2) [MIM:606744]: A rare autosomal recessive disorder characterized by proportionate dwarfism of prenatal onset associated with low birth weight, growth retardation, severe microcephaly with a bird-headed like appearance, and mental retardation. {ECO:0000269 PubMed:21998596, ECO:0000269 PubMed:24389050}. Note=The disease is caused by mutations affecting the gene represented in this entry.
  • Jawad syndrome (JWDS) [MIM:251255]: A syndrome characterized by congenital microcephaly, moderately severe mental retardation, and symmetrical digital anomalies. Digital malformations of variable degree include hallux valgus, syndactyly of toes 4 and 5, short fifth fingers, single flexion crease of fifth fingers, polydactyly and synpolydactyly. {ECO:0000269 PubMed:21998596}. Note=The disease is caused by mutations affecting the gene represented in this entry.
  • Note=Genetic variability in RBBP8 is noted as a factor in BRCA1-associated breast cancer risk (PubMed:21799032). Associated with sensitivity to tamoxifen in certain breast cancer cell lines (PubMed:18171986). {ECO:0000269 PubMed:18171986, ECO:0000269 PubMed:21799032}.

Additional Disease Information for RBBP8

Genetic Association Database
(GAD)
Human Genome Epidemiology Navigator
(HuGE)
ATLAS of Genetics and Cytogenetics in Oncology and Haematology
genes like me logo Genes that share disorders with RBBP8: view

No data available for Genatlas for RBBP8 Gene

Publications for RBBP8 Gene

  1. Human CtIP promotes DNA end resection. (PMID: 17965729) Sartori AA … Jackson SP (Nature 2007) 2 3 4 23 54
  2. Molecular cloning and characterization of a novel retinoblastoma-binding protein. (PMID: 9721205) Fusco C … Zervos AS (Genomics 1998) 2 3 4 23 54
  3. CtIP Mutations Cause Seckel and Jawad Syndromes. (PMID: 21998596) Qvist P … Børglum AD (PLoS genetics 2011) 2 3 4 54
  4. Functional complementation studies identify candidate genes and common genetic variants associated with ovarian cancer survival. (PMID: 19270026) Quaye L … Gayther SA (Human molecular genetics 2009) 3 4 41 54
  5. N terminus of CtIP is critical for homologous recombination-mediated double-strand break repair. (PMID: 19759395) Yuan J … Chen J (The Journal of biological chemistry 2009) 3 4 23 54

ExternalLinks

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Products for RBBP8 Gene

  • Addgene plasmids for RBBP8

Sources for RBBP8 Gene